ID   RAFR_PEDPE              Reviewed;         277 AA.
AC   P43465;
DT   01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1995, sequence version 1.
DT   25-MAY-2022, entry version 86.
DE   RecName: Full=Raffinose operon transcriptional regulatory protein RafR;
GN   Name=rafR;
OS   Pediococcus pentosaceus.
OC   Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC   Pediococcus.
OX   NCBI_TaxID=1255;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=PPE1.0;
RA   Leenhouts K.K.J., Bolhuis A.A., Kok J.J., Venema G.G.;
RT   "The sucrose and raffinose operons of Pediococcus pentosaceus PPE1.0.";
RL   Submitted (APR-1994) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Involved in the regulation of the raffinose-operon.
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DR   EMBL; Z32771; CAA83663.1; -; Genomic_DNA.
DR   EMBL; L32093; AAA25562.1; -; Genomic_DNA.
DR   PIR; S44252; S44252.
DR   AlphaFoldDB; P43465; -.
DR   SMR; P43465; -.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   InterPro; IPR003313; AraC-bd.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR037923; HTH-like.
DR   InterPro; IPR018060; HTH_AraC.
DR   InterPro; IPR018062; HTH_AraC-typ_CS.
DR   InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR   Pfam; PF02311; AraC_binding; 1.
DR   Pfam; PF12833; HTH_18; 1.
DR   PRINTS; PR00032; HTHARAC.
DR   SMART; SM00342; HTH_ARAC; 1.
DR   SUPFAM; SSF46689; SSF46689; 2.
DR   SUPFAM; SSF51215; SSF51215; 1.
DR   PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR   PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE   4: Predicted;
KW   Activator; DNA-binding; Transcription; Transcription regulation.
FT   CHAIN           1..277
FT                   /note="Raffinose operon transcriptional regulatory protein
FT                   RafR"
FT                   /id="PRO_0000194548"
FT   DOMAIN          176..274
FT                   /note="HTH araC/xylS-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT   DNA_BIND        193..214
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT   DNA_BIND        241..264
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
SQ   SEQUENCE   277 AA;  31532 MW;  8CE8AA5E9412B200 CRC64;
     MNGEYKTLAN KSFESNVLFF GQEACLPNYT YKGNNVRDSY VIHYIQEGKG TFAAANHPAT
     VLKAGDIFIL PKGTPCFYQA DNDQPWKYFW IGFSAGIRIE AMLSGSLLAQ KCYLRQVQNG
     HIYADLSELY KVLHIPNSLI NDVLLGSLIY RLFYDLLRWY PADATNIKVK STEQFNLAVS
     YLQENYSTGC TIMDLCHYLN LSRSYLYTLF KTHANTSPQK LLTKLRLEDA KQRLSTSNNS
     VQSIANMVGY KDSFTFSKAF KRYSGASPSY YRKSIGI