RAP29_ARATH
ID RAP29_ARATH Reviewed; 150 AA.
AC Q8W3M3; O23111; Q42316;
DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Ethylene-responsive transcription factor RAP2-9;
DE AltName: Full=Protein RELATED TO APETALA2 9;
GN Name=RAP2-9; Synonyms=ERF007; OrderedLocusNames=At4g06746;
GN ORFNames=F15N16.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11853315; DOI=10.1093/dnares/8.6.285;
RA Kumekawa N., Hosouchi T., Tsuruoka H., Kotani H.;
RT "The size and sequence organization of the centromeric region of
RT Arabidopsis thaliana chromosome 4.";
RL DNA Res. 8:285-290(2001).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., Luo J.-C.,
RA Deng X.-W., Zhu Y.-X.;
RT "Molecular cloning, expression, phylogenetic and functional
RT characterization of the Arabidopsis AP2/EREBP transcription factor
RT family.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 57-150.
RX PubMed=9192694; DOI=10.1073/pnas.94.13.7076;
RA Okamuro J.K., Caster B., Villarroel R., Van Montagu M., Jofuku K.D.;
RT "The AP2 domain of APETALA2 defines a large new family of DNA binding
RT proteins in Arabidopsis.";
RL Proc. Natl. Acad. Sci. U.S.A. 94:7076-7081(1997).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 57-150.
RC STRAIN=cv. Columbia; TISSUE=Seed;
RA Raynal M., Grellet F., Laudie M., Meyer Y., Cooke R., Delseny M.;
RT "The Arabidopsis thaliana transcribed genome: the GDR cDNA program.";
RL Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
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DR EMBL; AB073166; BAB83615.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82561.1; -; Genomic_DNA.
DR EMBL; AY560869; AAT44936.1; -; mRNA.
DR EMBL; BT024689; ABD57514.1; -; mRNA.
DR EMBL; AF003102; AAC49775.1; -; mRNA.
DR EMBL; Z37270; CAA85536.1; -; mRNA.
DR RefSeq; NP_849340.1; NM_179009.2.
DR AlphaFoldDB; Q8W3M3; -.
DR SMR; Q8W3M3; -.
DR BioGRID; 11454; 9.
DR IntAct; Q8W3M3; 9.
DR STRING; 3702.AT4G06746.1; -.
DR iPTMnet; Q8W3M3; -.
DR PaxDb; Q8W3M3; -.
DR PRIDE; Q8W3M3; -.
DR ProteomicsDB; 236518; -.
DR EnsemblPlants; AT4G06746.1; AT4G06746.1; AT4G06746.
DR GeneID; 826148; -.
DR Gramene; AT4G06746.1; AT4G06746.1; AT4G06746.
DR KEGG; ath:AT4G06746; -.
DR Araport; AT4G06746; -.
DR TAIR; locus:1005716457; AT4G06746.
DR eggNOG; ENOG502S0BY; Eukaryota.
DR HOGENOM; CLU_063331_7_2_1; -.
DR InParanoid; Q8W3M3; -.
DR OMA; NEYPESC; -.
DR OrthoDB; 1369964at2759; -.
DR PhylomeDB; Q8W3M3; -.
DR PRO; PR:Q8W3M3; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8W3M3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Ethylene signaling pathway; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..150
FT /note="Ethylene-responsive transcription factor RAP2-9"
FT /id="PRO_0000297938"
FT DNA_BIND 35..92
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT CONFLICT 146
FT /note="E -> Q (in Ref. 6; CAA85536)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 150 AA; 17199 MW; 4F183C3CBACEF059 CRC64;
MVIQYKRKQE FPMVKEGMVM TEKPKRNLIS SNEKRYKGIR MRKWGKWVAE IREPNKRSRI
WLGSYKTAVA AARAYDTAVF YLRGPSARLN FPEEVFKDGN GGEGLGGDMS PTLIRKKAAE
VGARVDAELR LENRMVENLD MNKLPEAYGL
