RAPA_ACTP7
ID RAPA_ACTP7 Reviewed; 969 AA.
AC B3H0F9;
DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 22-JUL-2008, sequence version 1.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=RNA polymerase-associated protein RapA {ECO:0000255|HAMAP-Rule:MF_01821};
DE EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_01821};
DE AltName: Full=ATP-dependent helicase HepA {ECO:0000255|HAMAP-Rule:MF_01821};
GN Name=rapA {ECO:0000255|HAMAP-Rule:MF_01821}; OrderedLocusNames=APP7_0319;
OS Actinobacillus pleuropneumoniae serotype 7 (strain AP76).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
OC Pasteurellaceae; Actinobacillus.
OX NCBI_TaxID=537457;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AP76;
RA Linke B., Buettner F., Martinez-Arias R., Goesmann A., Baltes N.,
RA Tegetmeyer H., Singh M., Gerlach G.F.;
RT "Genome and proteome analysis of A. pleuropneumoniae serotype 7.";
RL Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcription regulator that activates transcription by
CC stimulating RNA polymerase (RNAP) recycling in case of stress
CC conditions such as supercoiled DNA or high salt concentrations.
CC Probably acts by releasing the RNAP, when it is trapped or immobilized
CC on tightly supercoiled DNA. Does not activate transcription on linear
CC DNA. Probably not involved in DNA repair. {ECO:0000255|HAMAP-
CC Rule:MF_01821}.
CC -!- SUBUNIT: Interacts with the RNAP. Has a higher affinity for the core
CC RNAP than for the holoenzyme. Its ATPase activity is stimulated by
CC binding to RNAP. {ECO:0000255|HAMAP-Rule:MF_01821}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_01821}.
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DR EMBL; CP001091; ACE60971.1; -; Genomic_DNA.
DR RefSeq; WP_005616776.1; NC_010939.1.
DR AlphaFoldDB; B3H0F9; -.
DR SMR; B3H0F9; -.
DR EnsemblBacteria; ACE60971; ACE60971; APP7_0319.
DR KEGG; apa:APP7_0319; -.
DR HOGENOM; CLU_011520_0_0_6; -.
DR OMA; MSILERD; -.
DR BioCyc; APLE537457:APP7_RS01640-MON; -.
DR Proteomes; UP000001226; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0016817; F:hydrolase activity, acting on acid anhydrides; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.50.10810; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_01821; Helicase_RapA; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR023949; Helicase_RapA.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR022737; RapA_C.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR040765; Tudor_1_RapA.
DR InterPro; IPR040766; Tudor_2_RapA.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF12137; RapA_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF18339; Tudor_1_RapA; 1.
DR Pfam; PF18337; Tudor_RapA; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW Activator; ATP-binding; DNA-binding; Helicase; Hydrolase;
KW Nucleotide-binding; Transcription; Transcription regulation.
FT CHAIN 1..969
FT /note="RNA polymerase-associated protein RapA"
FT /id="PRO_1000188165"
FT DOMAIN 162..339
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01821"
FT DOMAIN 492..663
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01821"
FT MOTIF 285..288
FT /note="DEAH box"
FT BINDING 175..182
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01821"
SQ SEQUENCE 969 AA; 109717 MW; 39BB5C4E088AED6F CRC64;
MFVVGQRWIS ESENNLGLGI VTASDNRTVT IQFPAAEEER IYALSVAPLT RVQFQKGDRI
NSVEGWQLDV EEVVENQGFI IYLGKRADSG EEAVLPEMQL DHKVSFSKPQ DRLFSAQIDR
SDRFALRYRA LQHQQAQFQS PLRGMRGIRA SLIPHQLHIA KEVGQRVAPR VLLADEVGLG
KTIEAGMILQ QQLFSGRVER VLVLVPESLQ HQWLVEMLRR FNLKFSLFDE ERCSDFDKAD
EDGNDVSENP FDSEALVIAS IDWLESSPNR AKQVLASHWD MLIVDEAHHL AWSEDEPSVG
YQFVERLSKQ TPAVLLLTAT PEQLGQESHF ARLALLDADR FYDYHSFIAE QKDYKPVADA
VATLLNDKPL SHDEQNSIAE LLSEKDTEPM FKVINSEKSK ENDRLQVRQE LIRELIDRHG
TSRVLFRNTR QGVKGFPHRV YHQITLEMPS QYTNALKVMG MMGGVTKDDQ LYPERLFQRM
NPAAKWADFD PRIEWLITFL KNHRDEKILV ICKQADTAIA LEQILREREA IRSAVFHEKM
SIVERDRASA YFAQMEEGAQ VLISSSIGSE GRNFQFASNL VLFNLPDNPD LLEQSIGRLD
RIGQKNDIQI HVPCFENSMQ MVLATWYHQG LNAFEETCPM GAALFREFGE ELEGFLKNPQ
AVGFDEFLVR TFKRQQQLKA ELEQGRDRLL ELNSNGGEVA QALAEAIAKE DNNPHLVNFA
LSLFDVIGLE QEDLGEQSIV ISPTGHMLVP DFPGIAEDGT TVTFDRQLAL MREDVEFLTW
DHPMIRNGID LITSGYIGKS AISLLINKNL PAGTLLLEAI YMVETQAPKG LNLTRFLPPT
PVRILLDNKG NDMAAQVSFA GLEKQLKPLN KQMANKIAKM AQADIKKLIG ISEQKIAAKL
PELIEKASQD ADSTLSAELH RLTSLQAVNK NIRSDEIEAL EQQRIESLKQ IALANWRLDS
LRVIVSNKE