RAVL4_ARATH
ID RAVL4_ARATH Reviewed; 333 AA.
AC Q9LS06; Q8LAA3;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 131.
DE RecName: Full=AP2/ERF and B3 domain-containing transcription factor ARF14;
DE AltName: Full=Protein AUXIN RESPONSE FACTOR 14;
DE AltName: Full=RAV1-like ethylene-responsive transcription factor ARF14;
GN Name=ARF14; OrderedLocusNames=At3g25730; ORFNames=K13N2.14, K13N2.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., Ruberti I.;
RT "Nucleotide sequence of the putative Arabidopsis ARF14.";
RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
RN [7]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. RAV
CC subfamily. {ECO:0000305}.
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DR EMBL; AJ441073; CAD29641.1; -; mRNA.
DR EMBL; AB028607; BAA95760.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77062.1; -; Genomic_DNA.
DR EMBL; AK229415; BAF01276.1; -; mRNA.
DR EMBL; AY087951; AAM65499.1; -; mRNA.
DR RefSeq; NP_189201.1; NM_113472.4.
DR AlphaFoldDB; Q9LS06; -.
DR SMR; Q9LS06; -.
DR IntAct; Q9LS06; 1.
DR STRING; 3702.AT3G25730.1; -.
DR PaxDb; Q9LS06; -.
DR PRIDE; Q9LS06; -.
DR EnsemblPlants; AT3G25730.1; AT3G25730.1; AT3G25730.
DR GeneID; 822164; -.
DR Gramene; AT3G25730.1; AT3G25730.1; AT3G25730.
DR KEGG; ath:AT3G25730; -.
DR Araport; AT3G25730; -.
DR TAIR; locus:2085969; AT3G25730.
DR eggNOG; ENOG502QRVI; Eukaryota.
DR HOGENOM; CLU_038898_0_0_1; -.
DR OMA; FIGWKSK; -.
DR OrthoDB; 810704at2759; -.
DR PhylomeDB; Q9LS06; -.
DR PRO; PR:Q9LS06; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LS06; baseline and differential.
DR Genevisible; Q9LS06; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR CDD; cd00018; AP2; 1.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF00847; AP2; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM00380; AP2; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Ethylene signaling pathway; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..333
FT /note="AP2/ERF and B3 domain-containing transcription
FT factor ARF14"
FT /id="PRO_0000290436"
FT DNA_BIND 61..116
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 183..289
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 329
FT /note="K -> N (in Ref. 5; AAM65499)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 333 AA; 37756 MW; 7672FBB33B193493 CRC64;
MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS
RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAHRFRGRD AVTNFKDTTF
EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE
LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS
YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR
LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL
