RB208_ORYSJ
ID RB208_ORYSJ Reviewed; 447 AA.
AC Q6YZW2; A0A0P0XI52;
DT 02-DEC-2020, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 138.
DE RecName: Full=RNA-binding protein 208 {ECO:0000303|PubMed:30190374};
GN Name=RBP-208 {ECO:0000303|PubMed:30190374};
GN OrderedLocusNames=Os08g0520300 {ECO:0000312|EMBL:BAT06291.1},
GN LOC_Os08g40880 {ECO:0000305};
GN ORFNames=OJ1003_A09.12 {ECO:0000312|EMBL:BAD10437.1},
GN OsJ_27962 {ECO:0000312|EMBL:EEE69011.1},
GN P0689E12.36 {ECO:0000312|EMBL:BAD09702.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP INTERACTION WITH RBP-P.
RX PubMed=30190374; DOI=10.1105/tpc.18.00321;
RA Tian L., Chou H.L., Zhang L., Hwang S.K., Starkenburg S.R., Doroshenk K.A.,
RA Kumamaru T., Okita T.W.;
RT "RNA-binding protein RBP-P is required for glutelin and prolamine mRNA
RT localization in rice endosperm cells.";
RL Plant Cell 30:2529-2552(2018).
CC -!- FUNCTION: RNA-binding protein. {ECO:0000305}.
CC -!- SUBUNIT: Interacts with RBP-P. {ECO:0000269|PubMed:30190374}.
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DR EMBL; AP004622; BAD09702.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24180.1; -; Genomic_DNA.
DR EMBL; AP005509; BAD10437.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT06291.1; -; Genomic_DNA.
DR EMBL; CM000145; EEE69011.1; -; Genomic_DNA.
DR EMBL; AK069912; BAG91671.1; -; mRNA.
DR RefSeq; XP_015649757.1; XM_015794271.1.
DR AlphaFoldDB; Q6YZW2; -.
DR SMR; Q6YZW2; -.
DR STRING; 4530.OS08T0520300-01; -.
DR PaxDb; Q6YZW2; -.
DR PRIDE; Q6YZW2; -.
DR EnsemblPlants; Os08t0520300-01; Os08t0520300-01; Os08g0520300.
DR GeneID; 4346063; -.
DR Gramene; Os08t0520300-01; Os08t0520300-01; Os08g0520300.
DR KEGG; osa:4346063; -.
DR eggNOG; KOG0118; Eukaryota.
DR HOGENOM; CLU_025000_0_0_1; -.
DR InParanoid; Q6YZW2; -.
DR OMA; VDYHDRR; -.
DR OrthoDB; 1066369at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 3.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; SSF54928; 2.
DR PROSITE; PS50102; RRM; 3.
PE 1: Evidence at protein level;
KW Reference proteome; Repeat; RNA-binding.
FT CHAIN 1..447
FT /note="RNA-binding protein 208"
FT /id="PRO_0000451592"
FT DOMAIN 73..147
FT /note="RRM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT DOMAIN 158..236
FT /note="RRM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT DOMAIN 282..356
FT /note="RRM 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 254..279
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 353..372
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 447 AA; 48765 MW; 158948E43F3E796B CRC64;
MNGAGGNHQQ QQQQQQRLRQ QQQQQALLMQ QALQQQQQYQ SGVLAAAAAA AMTQMEPISN
GNLPPGFDPS TCRSVYVGNV HPNVTESLLI EVFQSSGLVE RCKLIRKEKS SFGFVDYYDR
RSAALAIMTL HGRHICGQAI KVNWAYASTQ REDTSGHFHI FVGDLSSEVN DATLYACFSA
YPSCSDARVM WDNKTGRSRG YGFVSFRNQQ EAETAITEMT GKWLGSRQIR CNWATKNNAE
EKQETDNHNA VVLTNGSSSN PGMEASQDTG SKENPENNPD CTTVYVGNLG HEVNRDELHR
HFYNLGVGAI EEVRVQQDKG FGFVRYSNHG EAALAIQMAN GLVVRGKPIK CSWGNKPTPP
GTSSKPLPPP LPSYQPVPMA GVPQGFSAAD IVAYQRQLTL SQVAAGQIAG QHGLAGQVSA
GLLAAGSQAL YDGYPNQSSA QQLMYYN
