RBP1_MEDTR
ID RBP1_MEDTR Reviewed; 261 AA.
AC Q8H0P8;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 25-MAY-2022, entry version 86.
DE RecName: Full=RNA-binding protein 1 {ECO:0000303|PubMed:15037734};
DE Short=MtRBP1 {ECO:0000303|PubMed:15037734};
GN Name=RBP1 {ECO:0000303|PubMed:15037734};
GN OrderedLocusNames=MTR_6g034835 {ECO:0000312|EnsemblPlants:KEH25820};
GN ORFNames=MTR_056s0008 {ECO:0000312|EMBL:AES83897.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000312|EMBL:CAD48198.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL
RP STAGE, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. R108; TISSUE=Root nodule;
RX PubMed=15037734; DOI=10.1105/tpc.019406;
RA Campalans A., Kondorosi A., Crespi M.;
RT "Enod40, a short open reading frame-containing mRNA, induces cytoplasmic
RT localization of a nuclear RNA binding protein in Medicago truncatula.";
RL Plant Cell 16:1047-1059(2004).
RN [2] {ECO:0000312|EMBL:KEH25820.1, ECO:0000312|EnsemblPlants:KEH25820, ECO:0000312|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jemalong A17;
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B.,
RA Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H.,
RA Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., Cheung F.,
RA De Mita S., Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K.,
RA Murray J.D., Naoumkina M.A., Rosen B., Silverstein K.A.T., Tang H.,
RA Rombauts S., Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M.,
RA Bellec A., Berger A., Berges H., Bidwell S., Bisseling T., Choisne N.,
RA Couloux A., Denny R., Deshpande S., Dai X., Doyle J.J., Dudez A.-M.,
RA Farmer A.D., Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S.,
RA Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., Humphray S.J.,
RA Jeong D.-H., Jing Y., Jocker A., Kenton S.M., Kim D.-J., Klee K., Lai H.,
RA Lang C., Lin S., Macmil S.L., Magdelenat G., Matthews L., McCorrison J.,
RA Monaghan E.L., Mun J.-H., Najar F.Z., Nicholson C., Noirot C.,
RA O'Bleness M., Paule C.R., Poulain J., Prion F., Qin B., Qu C., Retzel E.F.,
RA Riddle C., Sallet E., Samain S., Samson N., Sanders I., Saurat O.,
RA Scarpelli C., Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R.,
RA Sims S., Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B.,
RA Wang K., Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D.,
RA White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F.,
RA Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D.,
RA Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Jemalong A17;
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
CC -!- FUNCTION: RNA-binding protein interacting with the enod40 RNA.
CC {ECO:0000269|PubMed:15037734}.
CC -!- SUBCELLULAR LOCATION: Nucleus speckle {ECO:0000269|PubMed:15037734}.
CC Cytoplasmic granule {ECO:0000269|PubMed:15037734}. Note=Exported into
CC cytoplasmic granules during nodule development. Relocalizes to
CC cytoplasmic granules when associated with enod40 RNA.
CC {ECO:0000269|PubMed:15037734}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15037734}.
CC -!- DEVELOPMENTAL STAGE: Constitutively expressed. Not regulated during
CC nodule development. {ECO:0000269|PubMed:15037734}.
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DR EMBL; AJ508392; CAD48198.1; -; mRNA.
DR EMBL; GL982906; AES83897.1; -; Genomic_DNA.
DR EMBL; CM001222; KEH25820.1; -; Genomic_DNA.
DR RefSeq; XP_013451792.1; XM_013596338.1.
DR AlphaFoldDB; Q8H0P8; -.
DR SMR; Q8H0P8; -.
DR STRING; 3880.AES83897; -.
DR EnsemblPlants; KEH25820; KEH25820; MTR_6g034835.
DR GeneID; 25496067; -.
DR Gramene; KEH25820; KEH25820; MTR_6g034835.
DR KEGG; mtr:MTR_6g034835; -.
DR eggNOG; ENOG502QVUV; Eukaryota.
DR HOGENOM; CLU_078642_1_0_1; -.
DR OMA; YDMPASG; -.
DR OrthoDB; 1252072at2759; -.
DR Proteomes; UP000002051; Chromosome 6.
DR GO; GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; RNA-binding.
FT CHAIN 1..261
FT /note="RNA-binding protein 1"
FT /id="PRO_0000434144"
FT DOMAIN 151..236
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 232..261
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 261 AA; 28155 MW; 6375987F5E9342A7 CRC64;
MADGYWNRQQ SLLPHSGLHK RPRPDYEMPA SGLPSGNEMH YLSREEDRSG HPMVKDSKTI
GSAYDRYLQG QVPSFTSGEA STVGALGLQR GIGGLPNHSL SDPSAMIGRH GGGGPDLAPN
GRGMNYGFQP PMDPVSRHGP EPALLPPDAS PTLYIEGLPS DCTRREVAHI FRPFVGYREV
RLVSKEAKHR GDPLILCFVD FANPACAATA LSALQGYKVD EINPESSHLR LQFSRYPGPR
SGGGPRSSGP PRGGHGSRGR R
