RCI2A_ARATH
ID RCI2A_ARATH Reviewed; 54 AA.
AC Q9ZNQ7;
DT 14-AUG-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Hydrophobic protein RCI2A;
DE AltName: Full=Low temperature and salt-responsive protein LTI6A;
GN Name=RCI2A; Synonyms=LTI6A; OrderedLocusNames=At3g05880;
GN ORFNames=F10A16.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Columbia;
RX PubMed=9342870; DOI=10.1104/pp.115.2.569;
RA Capel J., Jarillo J.A., Salinas J., Martinez-Zapater J.M.;
RT "Two homologous low-temperature-inducible genes from Arabidopsis encode
RT highly hydrophobic proteins.";
RL Plant Physiol. 115:569-576(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE.
RA Nylander M., Helenius E., Lindgren O., Baudo M.M., Heino P.;
RT "Isolation and characterization of two homologous low temperature and salt
RT responsive genes in Arabidopsis thaliana.";
RL Submitted (NOV-1998) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Columbia;
RX PubMed=11299347; DOI=10.1104/pp.125.4.1655;
RA Medina J., Catala R., Salinas J.;
RT "Developmental and stress regulation of RCI2A and RCI2B, two cold-inducible
RT genes of Arabidopsis encoding highly conserved hydrophobic proteins.";
RL Plant Physiol. 125:1655-1666(2001).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- INDUCTION: By low temperature. Also promoted by abscisic acid (ABA) and
CC dehydration but is not a general response to stress conditions.
CC -!- SIMILARITY: Belongs to the UPF0057 (PMP3) family. {ECO:0000305}.
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DR EMBL; AF122005; AAD17302.1; -; mRNA.
DR EMBL; AF104221; AAC97512.1; -; Genomic_DNA.
DR EMBL; AF264749; AAK50619.1; -; Genomic_DNA.
DR EMBL; AC012393; AAF26090.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74311.1; -; Genomic_DNA.
DR EMBL; AY037244; AAK59845.1; -; mRNA.
DR EMBL; AY039859; AAK63963.1; -; mRNA.
DR EMBL; AY077650; AAL76128.1; -; mRNA.
DR RefSeq; NP_187239.1; NM_111462.2.
DR AlphaFoldDB; Q9ZNQ7; -.
DR STRING; 3702.AT3G05880.1; -.
DR TCDB; 9.B.12.1.6; the sensitivity to sodium or salt stress-induced hydrophobic peptide (sna) family.
DR PaxDb; Q9ZNQ7; -.
DR PRIDE; Q9ZNQ7; -.
DR EnsemblPlants; AT3G05880.1; AT3G05880.1; AT3G05880.
DR GeneID; 819757; -.
DR Gramene; AT3G05880.1; AT3G05880.1; AT3G05880.
DR KEGG; ath:AT3G05880; -.
DR Araport; AT3G05880; -.
DR TAIR; locus:2074509; AT3G05880.
DR eggNOG; KOG1773; Eukaryota.
DR HOGENOM; CLU_107649_6_0_1; -.
DR InParanoid; Q9ZNQ7; -.
DR OMA; WLVVSDK; -.
DR OrthoDB; 1623763at2759; -.
DR PhylomeDB; Q9ZNQ7; -.
DR PRO; PR:Q9ZNQ7; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9ZNQ7; baseline and differential.
DR Genevisible; Q9ZNQ7; AT.
DR GO; GO:0016021; C:integral component of membrane; ISS:TAIR.
DR GO; GO:0042538; P:hyperosmotic salinity response; TAS:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; TAS:TAIR.
DR GO; GO:0009409; P:response to cold; TAS:TAIR.
DR InterPro; IPR000612; PMP3.
DR PANTHER; PTHR21659; PTHR21659; 1.
DR Pfam; PF01679; Pmp3; 1.
DR PROSITE; PS01309; UPF0057; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..54
FT /note="Hydrophobic protein RCI2A"
FT /id="PRO_0000193972"
FT TRANSMEM 2..22
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 32..52
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 54 AA; 5962 MW; EE9927CED8B7F7E7 CRC64;
MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
