RCI2B_ARATH
ID RCI2B_ARATH Reviewed; 54 AA.
AC Q9ZNS6; Q9M9K9;
DT 14-AUG-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Hydrophobic protein RCI2B;
DE AltName: Full=Low temperature and salt-responsive protein LTI6B;
GN Name=RCI2B; Synonyms=LTI6B; OrderedLocusNames=At3g05890;
GN ORFNames=F10A16.19, F2O10.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Columbia;
RX PubMed=9342870; DOI=10.1104/pp.115.2.569;
RA Capel J., Jarillo J.A., Salinas J., Martinez-Zapater J.M.;
RT "Two homologous low-temperature-inducible genes from Arabidopsis encode
RT highly hydrophobic proteins.";
RL Plant Physiol. 115:569-576(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE.
RA Nylander M., Helenius E., Lindgren O., Baudo M.M., Heino P.;
RT "Isolation and characterization of two homologous low temperature and salt
RT responsive genes in Arabidopsis thaliana.";
RL Submitted (NOV-1998) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Columbia;
RX PubMed=11299347; DOI=10.1104/pp.125.4.1655;
RA Medina J., Catala R., Salinas J.;
RT "Developmental and stress regulation of RCI2A and RCI2B, two cold-inducible
RT genes of Arabidopsis encoding highly conserved hydrophobic proteins.";
RL Plant Physiol. 125:1655-1666(2001).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- INDUCTION: By low temperature. Also promoted by abscisic acid (ABA) and
CC dehydration but is not a general response to stress conditions.
CC -!- SIMILARITY: Belongs to the UPF0057 (PMP3) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF26091.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF122006; AAD17303.1; -; mRNA.
DR EMBL; AF104221; AAC97511.1; -; Genomic_DNA.
DR EMBL; AF264749; AAK50618.1; -; Genomic_DNA.
DR EMBL; AC012393; AAF26091.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC013454; AAF23227.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74312.1; -; Genomic_DNA.
DR EMBL; AY084701; AAM61275.1; -; mRNA.
DR RefSeq; NP_187240.1; NM_111463.2.
DR AlphaFoldDB; Q9ZNS6; -.
DR STRING; 3702.AT3G05890.1; -.
DR PaxDb; Q9ZNS6; -.
DR EnsemblPlants; AT3G05890.1; AT3G05890.1; AT3G05890.
DR GeneID; 819758; -.
DR Gramene; AT3G05890.1; AT3G05890.1; AT3G05890.
DR KEGG; ath:AT3G05890; -.
DR Araport; AT3G05890; -.
DR TAIR; locus:2074419; AT3G05890.
DR eggNOG; KOG1773; Eukaryota.
DR HOGENOM; CLU_107649_6_0_1; -.
DR InParanoid; Q9ZNS6; -.
DR OMA; YAVWVII; -.
DR OrthoDB; 1623763at2759; -.
DR PhylomeDB; Q9ZNS6; -.
DR PRO; PR:Q9ZNS6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9ZNS6; baseline and differential.
DR Genevisible; Q9ZNS6; AT.
DR GO; GO:0016021; C:integral component of membrane; ISS:TAIR.
DR GO; GO:0009409; P:response to cold; IMP:TAIR.
DR InterPro; IPR000612; PMP3.
DR PANTHER; PTHR21659; PTHR21659; 1.
DR Pfam; PF01679; Pmp3; 1.
DR PROSITE; PS01309; UPF0057; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..54
FT /note="Hydrophobic protein RCI2B"
FT /id="PRO_0000193973"
FT TRANSMEM 2..22
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 32..52
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 54 AA; 6082 MW; AAB431F3F4ACC7A6 CRC64;
MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK
