RD10A_DANRE
ID RD10A_DANRE Reviewed; 339 AA.
AC A1L1W4;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 06-FEB-2007, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Retinol dehydrogenase 10-A;
DE EC=1.1.1.300;
GN Name=rdh10a; ORFNames=zgc:158459;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Embryo;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Retinol dehydrogenase with a clear preference for NADP.
CC Converts all-trans-retinol to all-trans-retinal. Has no detectable
CC activity towards 11-cis-retinol, 9-cis-retinol and 13-cis-retinol (By
CC similarity). {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=all-trans-retinol + NADP(+) = all-trans-retinal + H(+) +
CC NADPH; Xref=Rhea:RHEA:25033, ChEBI:CHEBI:15378, ChEBI:CHEBI:17336,
CC ChEBI:CHEBI:17898, ChEBI:CHEBI:57783, ChEBI:CHEBI:58349;
CC EC=1.1.1.300;
CC -!- PATHWAY: Cofactor metabolism; retinol metabolism.
CC -!- SUBCELLULAR LOCATION: Microsome membrane {ECO:0000305}; Single-pass
CC membrane protein {ECO:0000305}. Endoplasmic reticulum membrane
CC {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR)
CC family. {ECO:0000305}.
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DR EMBL; BC129239; AAI29240.1; -; mRNA.
DR RefSeq; NP_001074052.1; NM_001080583.1.
DR AlphaFoldDB; A1L1W4; -.
DR SMR; A1L1W4; -.
DR STRING; 7955.ENSDARP00000066702; -.
DR PaxDb; A1L1W4; -.
DR Ensembl; ENSDART00000191533; ENSDARP00000144743; ENSDARG00000113421.
DR GeneID; 562840; -.
DR KEGG; dre:562840; -.
DR CTD; 562840; -.
DR ZFIN; ZDB-GENE-070112-2242; rdh10a.
DR eggNOG; KOG1201; Eukaryota.
DR InParanoid; A1L1W4; -.
DR OrthoDB; 1373099at2759; -.
DR PhylomeDB; A1L1W4; -.
DR Reactome; R-DRE-2453902; The canonical retinoid cycle in rods (twilight vision).
DR Reactome; R-DRE-5365859; RA biosynthesis pathway.
DR UniPathway; UPA00912; -.
DR PRO; PR:A1L1W4; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Unplaced.
DR Bgee; ENSDARG00000113421; Expressed in multicellular organism and 19 other tissues.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005811; C:lipid droplet; IBA:GO_Central.
DR GO; GO:0052650; F:NADP-retinol dehydrogenase activity; IEA:UniProtKB-EC.
DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IBA:GO_Central.
DR GO; GO:0002138; P:retinoic acid biosynthetic process; IMP:ZFIN.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR032970; RDH10.
DR InterPro; IPR020904; Sc_DH/Rdtase_CS.
DR InterPro; IPR002347; SDR_fam.
DR PANTHER; PTHR24322:SF731; PTHR24322:SF731; 1.
DR Pfam; PF00106; adh_short; 1.
DR PRINTS; PR00081; GDHRDH.
DR PRINTS; PR00080; SDRFAMILY.
DR SUPFAM; SSF51735; SSF51735; 1.
DR PROSITE; PS00061; ADH_SHORT; 1.
PE 2: Evidence at transcript level;
KW Endoplasmic reticulum; Membrane; Microsome; NADP; Oxidoreductase;
KW Reference proteome; Signal-anchor; Transmembrane; Transmembrane helix.
FT CHAIN 1..339
FT /note="Retinol dehydrogenase 10-A"
FT /id="PRO_0000307686"
FT TRANSMEM 3..23
FT /note="Helical; Signal-anchor"
FT /evidence="ECO:0000255"
FT ACT_SITE 208
FT /note="Proton acceptor"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10001"
FT BINDING 40..64
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT BINDING 195
FT /ligand="substrate"
FT /evidence="ECO:0000250"
SQ SEQUENCE 339 AA; 38232 MW; A8A4D0D1B4A587A1 CRC64;
MNIFVEFFLV MLKVCWAIVM AGFKWLIRPK EKSVAGQVCV ITGAGGGLGR LFAKEFARRR
ATLVLWDINS HSNEETAEMV RQIYREQDNP MSKEGAVGGV EEVPPFQPQV YTYVLDVGKR
ESVYSTAEKV RREVGEVDLL INNAGVVSGH HLLECPDELI ERTMVVNCHA HFWTTKAFLP
KMLEMNHGHI VTVASSLGLF STAGVEDYCA SKFGAIGFHE SLSHEIQASE KDGIKMTLVC
PYLVDTGMFR GCRIRKEIEP FLPPLRPEFC VKQAMRAILT DQPMICTPRI VYMVNFMKSI
LPFEAIVCMY RFLGADKCMY PFLAQRKEAM NNNEAKNGI