RD22_ARATH
ID RD22_ARATH Reviewed; 392 AA.
AC Q08298; Q56WL9;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 25-MAY-2022, entry version 124.
DE RecName: Full=BURP domain protein RD22 {ECO:0000303|PubMed:9790599};
DE AltName: Full=Dehydration-responsive protein RD22 {ECO:0000303|PubMed:8479424};
DE Flags: Precursor;
GN Name=RD22 {ECO:0000303|PubMed:8479424};
GN OrderedLocusNames=At5g25610 {ECO:0000312|Araport:AT5G25610};
GN ORFNames=T14C9.150 {ECO:0000312|EMBL:AC006601};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
RP AND INDUCTION.
RC STRAIN=cv. Columbia;
RX PubMed=8479424; DOI=10.1007/bf00279525;
RA Yamaguchi-Shinozaki K., Shinozaki K.;
RT "The plant hormone abscisic acid mediates the drought-induced expression
RT but not the seed-specific expression of rd22, a gene responsive to
RT dehydration stress in Arabidopsis thaliana.";
RL Mol. Gen. Genet. 238:17-25(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 285-392.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP DOMAIN.
RX PubMed=9790599; DOI=10.1007/s004380050832;
RA Hattori J., Boutilier K.A., van Lookeren Campagne M.M., Miki B.L.;
RT "A conserved BURP domain defines a novel group of plant proteins with
RT unusual primary structures.";
RL Mol. Gen. Genet. 259:424-428(1998).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19639386; DOI=10.1007/s11103-009-9526-6;
RA Van Son L., Tiedemann J., Rutten T., Hillmer S., Hinz G., Zank T.,
RA Manteuffel R., Baeumlein H.;
RT "The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the
RT protein storage vacuoles and overexpression of the cognate gene distorts
RT seed development.";
RL Plant Mol. Biol. 71:319-329(2009).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, INDUCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Columbia;
RX PubMed=25333723; DOI=10.1371/journal.pone.0110065;
RA Harshavardhan V.T., Van Son L., Seiler C., Junker A., Weigelt-Fischer K.,
RA Klukas C., Altmann T., Sreenivasulu N., Baeumlein H., Kuhlmann M.;
RT "AtRD22 and AtUSPL1, members of the plant-specific BURP domain family
RT involved in Arabidopsis thaliana drought tolerance.";
RL PLoS ONE 9:E110065-E110065(2014).
RN [9]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=26106400; DOI=10.3389/fpls.2015.00412;
RA Park J., Cui Y., Kang B.H.;
RT "AtPGL3 is an Arabidopsis BURP domain protein that is localized to the cell
RT wall and promotes cell enlargement.";
RL Front. Plant Sci. 6:412-412(2015).
CC -!- FUNCTION: Acts to suppress chlorophyll degradation under moisture
CC stress. {ECO:0000269|PubMed:25333723}.
CC -!- TISSUE SPECIFICITY: Expressed in seed (PubMed:8479424). Highest
CC expression in leaves and guard cells (PubMed:25333723).
CC {ECO:0000269|PubMed:8479424, ECO:0000305|PubMed:25333723}.
CC -!- DEVELOPMENTAL STAGE: Expressed during the early and middle stages of
CC seed development (PubMed:8479424). Abundant throughout plant
CC development in the aerial part of the plant (PubMed:25333723).
CC {ECO:0000269|PubMed:8479424, ECO:0000305|PubMed:25333723}.
CC -!- INDUCTION: Up-regulated by dehydration, salt stress and abscisic acid
CC (ABA). Not regulated by cold. {ECO:0000269|PubMed:25333723,
CC ECO:0000269|PubMed:8479424}.
CC -!- DOMAIN: The BURP domain located at the C-terminus has not been
CC identified in non-plant proteins. {ECO:0000269|PubMed:9790599}.
CC -!- DISRUPTION PHENOTYPE: Enhanced drought tolerance.
CC {ECO:0000269|PubMed:25333723}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD93841.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAD94687.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; D10703; BAA01546.1; -; Genomic_DNA.
DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93472.1; -; Genomic_DNA.
DR EMBL; AY090244; AAL90908.1; -; mRNA.
DR EMBL; AY060560; AAL31189.1; -; mRNA.
DR EMBL; BT009697; AAP88331.1; -; mRNA.
DR EMBL; AK220718; BAD93841.1; ALT_INIT; mRNA.
DR EMBL; AK222019; BAD94687.1; ALT_INIT; mRNA.
DR PIR; S34823; S34823.
DR RefSeq; NP_197943.1; NM_122472.4.
DR AlphaFoldDB; Q08298; -.
DR BioGRID; 17911; 2.
DR STRING; 3702.AT5G25610.1; -.
DR SwissPalm; Q08298; -.
DR PaxDb; Q08298; -.
DR PRIDE; Q08298; -.
DR ProteomicsDB; 225927; -.
DR EnsemblPlants; AT5G25610.1; AT5G25610.1; AT5G25610.
DR GeneID; 832636; -.
DR Gramene; AT5G25610.1; AT5G25610.1; AT5G25610.
DR KEGG; ath:AT5G25610; -.
DR Araport; AT5G25610; -.
DR TAIR; locus:2179424; AT5G25610.
DR eggNOG; ENOG502QQHP; Eukaryota.
DR HOGENOM; CLU_011822_1_1_1; -.
DR InParanoid; Q08298; -.
DR OMA; NVAPFIY; -.
DR OrthoDB; 781608at2759; -.
DR PhylomeDB; Q08298; -.
DR PRO; PR:Q08298; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q08298; baseline and differential.
DR Genevisible; Q08298; AT.
DR GO; GO:0005768; C:endosome; HDA:TAIR.
DR GO; GO:0005794; C:Golgi apparatus; HDA:TAIR.
DR GO; GO:0005802; C:trans-Golgi network; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009651; P:response to salt stress; IEP:TAIR.
DR InterPro; IPR044816; BURP.
DR InterPro; IPR004873; BURP_dom.
DR PANTHER; PTHR31236; PTHR31236; 1.
DR Pfam; PF03181; BURP; 1.
DR SMART; SM01045; BURP; 1.
DR PROSITE; PS51277; BURP; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat; Signal; Stress response.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..392
FT /note="BURP domain protein RD22"
FT /id="PRO_0000022202"
FT REPEAT 56..58
FT /note="TXV 1"
FT /evidence="ECO:0000305"
FT REPEAT 78..80
FT /note="TXV 2"
FT /evidence="ECO:0000305"
FT REPEAT 100..102
FT /note="TXV 3"
FT /evidence="ECO:0000305"
FT REPEAT 125..127
FT /note="TXV 4"
FT /evidence="ECO:0000305"
FT DOMAIN 176..392
FT /note="BURP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00604"
FT REGION 57..164
FT /note="5 X approximate repeats"
FT REGION 61..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..76
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 392 AA; 42260 MW; 511A76D8C59225B3 CRC64;
MAIRLPLICL LGSFMVVAIA ADLTPERYWS TALPNTPIPN SLHNLLTFDF TDEKSTNVQV
GKGGVNVNTH KGKTGSGTAV NVGKGGVRVD TGKGKPGGGT HVSVGSGKGH GGGVAVHTGK
PGKRTDVGVG KGGVTVHTRH KGRPIYVGVK PGANPFVYNY AAKETQLHDD PNAALFFLEK
DLVRGKEMNV RFNAEDGYGG KTAFLPRGEA ETVPFGSEKF SETLKRFSVE AGSEEAEMMK
KTIEECEARK VSGEEKYCAT SLESMVDFSV SKLGKYHVRA VSTEVAKKNA PMQKYKIAAA
GVKKLSDDKS VVCHKQKYPF AVFYCHKAMM TTVYAVPLEG ENGMRAKAVA VCHKNTSAWN
PNHLAFKVLK VKPGTVPVCH FLPETHVVWF SY
