RDGC_ECOLI
ID RDGC_ECOLI Reviewed; 303 AA.
AC P36767; Q2MC32;
DT 01-JUN-1994, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-1994, sequence version 1.
DT 03-AUG-2022, entry version 158.
DE RecName: Full=Recombination-associated protein RdgC;
GN Name=rdgC; Synonyms=yaiD; OrderedLocusNames=b0393, JW0384;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=8807285; DOI=10.1093/genetics/143.3.1101;
RA Ryder L., Sharples G.J., Lloyd R.G.;
RT "Recombination-dependent growth in exonuclease-depleted recBC sbcBC strains
RT of Escherichia coli K-12.";
RL Genetics 143:1101-1114(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [5]
RP PROTEIN SEQUENCE OF 1-15.
RX PubMed=10368163; DOI=10.1128/jb.181.12.3842-3844.1999;
RA Murphy L.D., Rosner J.L., Zimmerman S.B., Esposito D.;
RT "Identification of two new proteins in spermidine nucleoids isolated from
RT Escherichia coli.";
RL J. Bacteriol. 181:3842-3844(1999).
CC -!- FUNCTION: May be involved in recombination.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, nucleoid.
CC -!- SIMILARITY: Belongs to the RdgC family. {ECO:0000305}.
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DR EMBL; X76979; CAA54285.1; -; Genomic_DNA.
DR EMBL; U73857; AAB18117.1; -; Genomic_DNA.
DR EMBL; U00096; AAC73496.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76174.1; -; Genomic_DNA.
DR PIR; S41303; S41303.
DR RefSeq; NP_414927.1; NC_000913.3.
DR RefSeq; WP_001298537.1; NZ_STEB01000007.1.
DR PDB; 2OWL; X-ray; 2.40 A; A/B=1-303.
DR PDBsum; 2OWL; -.
DR AlphaFoldDB; P36767; -.
DR SMR; P36767; -.
DR BioGRID; 4263190; 133.
DR DIP; DIP-10649N; -.
DR IntAct; P36767; 6.
DR STRING; 511145.b0393; -.
DR jPOST; P36767; -.
DR PaxDb; P36767; -.
DR PRIDE; P36767; -.
DR EnsemblBacteria; AAC73496; AAC73496; b0393.
DR EnsemblBacteria; BAE76174; BAE76174; BAE76174.
DR GeneID; 66671307; -.
DR GeneID; 948585; -.
DR KEGG; ecj:JW0384; -.
DR KEGG; eco:b0393; -.
DR PATRIC; fig|511145.12.peg.406; -.
DR EchoBASE; EB2078; -.
DR eggNOG; COG2974; Bacteria.
DR HOGENOM; CLU_052038_1_1_6; -.
DR InParanoid; P36767; -.
DR OMA; RFDADFT; -.
DR PhylomeDB; P36767; -.
DR BioCyc; EcoCyc:EG12158-MON; -.
DR EvolutionaryTrace; P36767; -.
DR PRO; PR:P36767; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0043590; C:bacterial nucleoid; IDA:EcoCyc.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0003690; F:double-stranded DNA binding; IDA:EcoCyc.
DR GO; GO:0003697; F:single-stranded DNA binding; IDA:EcoCyc.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-UniRule.
DR GO; GO:0000018; P:regulation of DNA recombination; IDA:EcoCyc.
DR HAMAP; MF_00194; RdgC; 1.
DR InterPro; IPR007476; RdgC.
DR PANTHER; PTHR38103; PTHR38103; 1.
DR Pfam; PF04381; RdgC; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; Direct protein sequencing; DNA recombination;
KW Reference proteome.
FT CHAIN 1..303
FT /note="Recombination-associated protein RdgC"
FT /id="PRO_0000211737"
FT STRAND 5..14
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 20..28
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 40..46
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 50..52
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 56..74
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 77..92
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 101..103
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 106..115
FT /evidence="ECO:0007829|PDB:2OWL"
FT TURN 116..118
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 120..131
FT /evidence="ECO:0007829|PDB:2OWL"
FT TURN 132..135
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 136..139
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 144..158
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 163..165
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 168..170
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 172..182
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 189..198
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 206..211
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 214..216
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 217..224
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 228..236
FT /evidence="ECO:0007829|PDB:2OWL"
FT TURN 237..239
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 240..245
FT /evidence="ECO:0007829|PDB:2OWL"
FT STRAND 250..255
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 257..260
FT /evidence="ECO:0007829|PDB:2OWL"
FT TURN 262..265
FT /evidence="ECO:0007829|PDB:2OWL"
FT HELIX 271..296
FT /evidence="ECO:0007829|PDB:2OWL"
SQ SEQUENCE 303 AA; 33993 MW; 1825EB06B6A67005 CRC64;
MLWFKNLMVY RLSREISLRA EEMEKQLASM AFTPCGSQDM AKMGWVPPMG SHSDALTHVA
NGQIVICARK EEKILPSPVI KQALEAKIAK LEAEQARKLK KTEKDSLKDE VLHSLLPRAF
SRFSQTMMWI DTVNGLIMVD CASAKKAEDT LALLRKSLGS LPVVPLSMEN PIELTLTEWV
RSGSAAQGFQ LLDEAELKSL LEDGGVIRAK KQDLTSEEIT NHIEAGKVVT KLALDWQQRI
QFVMCDDGSL KRLKFCDELR DQNEDIDRED FAQRFDADFI LMTGELAALI QNLIEGLGGE
AQR
