RDH10_HUMAN
ID RDH10_HUMAN Reviewed; 341 AA.
AC Q8IZV5;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 160.
DE RecName: Full=Retinol dehydrogenase 10;
DE EC=1.1.1.300;
DE AltName: Full=Short chain dehydrogenase/reductase family 16C member 4;
GN Name=RDH10; Synonyms=SDR16C4; ORFNames=UNQ9375/PRO34191;
OS Homo sapiens (Human).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
OX NCBI_TaxID=9606;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR
RP LOCATION, AND TISSUE SPECIFICITY.
RC TISSUE=Retina;
RX PubMed=12407145;
RA Wu B.X., Chen Y., Chen Y., Fan J., Rohrer B., Crouch R.K., Ma J.-X.;
RT "Cloning and characterization of a novel all-trans retinol short-chain
RT dehydrogenase/reductase from the RPE.";
RL Invest. Ophthalmol. Vis. Sci. 43:3365-3372(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RX PubMed=12975309; DOI=10.1101/gr.1293003;
RA Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J.,
RA Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P.,
RA Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S., Huang A.,
RA Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D.,
RA Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L.,
RA Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C.,
RA Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J.,
RA Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M.;
RT "The secreted protein discovery initiative (SPDI), a large-scale effort to
RT identify novel human secreted and transmembrane proteins: a bioinformatics
RT assessment.";
RL Genome Res. 13:2265-2270(2003).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Eye;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
RN [4]
RP TISSUE SPECIFICITY.
RX PubMed=14596915; DOI=10.1016/s0014-5793(03)01089-5;
RA Picozzi P., Marozzi A., Fornasari D., Benfante R., Barisani D.,
RA Meneveri R., Ginelli E.;
RT "Genomic organization and transcription of the human retinol dehydrogenase
RT 10 (RDH10) gene.";
RL FEBS Lett. 554:59-66(2003).
CC -!- FUNCTION: Retinol dehydrogenase with a clear preference for NADP.
CC Converts all-trans-retinol to all-trans-retinal. Has no detectable
CC activity towards 11-cis-retinol, 9-cis-retinol and 13-cis-retinol.
CC {ECO:0000269|PubMed:12407145}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=all-trans-retinol + NADP(+) = all-trans-retinal + H(+) +
CC NADPH; Xref=Rhea:RHEA:25033, ChEBI:CHEBI:15378, ChEBI:CHEBI:17336,
CC ChEBI:CHEBI:17898, ChEBI:CHEBI:57783, ChEBI:CHEBI:58349;
CC EC=1.1.1.300; Evidence={ECO:0000269|PubMed:12407145};
CC -!- PATHWAY: Cofactor metabolism; retinol metabolism.
CC -!- INTERACTION:
CC Q8IZV5; Q96CM8: ACSF2; NbExp=3; IntAct=EBI-11913715, EBI-2876502;
CC Q8IZV5; Q9BW61: DDA1; NbExp=3; IntAct=EBI-11913715, EBI-2510241;
CC Q8IZV5; Q05329: GAD2; NbExp=3; IntAct=EBI-11913715, EBI-9304251;
CC Q8IZV5; Q96LZ7: RMDN2; NbExp=3; IntAct=EBI-11913715, EBI-2806908;
CC -!- SUBCELLULAR LOCATION: Microsome membrane {ECO:0000305}; Single-pass
CC membrane protein {ECO:0000305}. Endoplasmic reticulum membrane
CC {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Detected in retina, kidney, liver, small intestine,
CC placenta, lung, heart and skeletal muscle.
CC {ECO:0000269|PubMed:12407145, ECO:0000269|PubMed:14596915}.
CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR)
CC family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF456765; AAN64747.1; -; mRNA.
DR EMBL; AY358270; AAQ88637.1; -; mRNA.
DR EMBL; BC067131; AAH67131.1; -; mRNA.
DR CCDS; CCDS6213.1; -.
DR RefSeq; NP_742034.1; NM_172037.4.
DR AlphaFoldDB; Q8IZV5; -.
DR SMR; Q8IZV5; -.
DR BioGRID; 127600; 45.
DR IntAct; Q8IZV5; 5.
DR STRING; 9606.ENSP00000240285; -.
DR SwissLipids; SLP:000001866; -.
DR iPTMnet; Q8IZV5; -.
DR PhosphoSitePlus; Q8IZV5; -.
DR SwissPalm; Q8IZV5; -.
DR BioMuta; RDH10; -.
DR DMDM; 74750799; -.
DR EPD; Q8IZV5; -.
DR jPOST; Q8IZV5; -.
DR MassIVE; Q8IZV5; -.
DR MaxQB; Q8IZV5; -.
DR PaxDb; Q8IZV5; -.
DR PeptideAtlas; Q8IZV5; -.
DR PRIDE; Q8IZV5; -.
DR ProteomicsDB; 71436; -.
DR Antibodypedia; 42541; 153 antibodies from 24 providers.
DR DNASU; 157506; -.
DR Ensembl; ENST00000240285.10; ENSP00000240285.5; ENSG00000121039.10.
DR GeneID; 157506; -.
DR KEGG; hsa:157506; -.
DR MANE-Select; ENST00000240285.10; ENSP00000240285.5; NM_172037.5; NP_742034.1.
DR UCSC; uc003xzi.4; human.
DR CTD; 157506; -.
DR DisGeNET; 157506; -.
DR GeneCards; RDH10; -.
DR HGNC; HGNC:19975; RDH10.
DR HPA; ENSG00000121039; Low tissue specificity.
DR MIM; 607599; gene.
DR neXtProt; NX_Q8IZV5; -.
DR OpenTargets; ENSG00000121039; -.
DR PharmGKB; PA134989620; -.
DR VEuPathDB; HostDB:ENSG00000121039; -.
DR eggNOG; KOG1201; Eukaryota.
DR GeneTree; ENSGT00940000157063; -.
DR HOGENOM; CLU_010194_2_5_1; -.
DR InParanoid; Q8IZV5; -.
DR OMA; VCTPRII; -.
DR OrthoDB; 1373099at2759; -.
DR PhylomeDB; Q8IZV5; -.
DR TreeFam; TF312837; -.
DR BioCyc; MetaCyc:ENSG00000121039-MON; -.
DR BRENDA; 1.1.1.105; 2681.
DR BRENDA; 1.1.1.300; 2681.
DR BRENDA; 1.1.1.315; 2681.
DR PathwayCommons; Q8IZV5; -.
DR Reactome; R-HSA-2453902; The canonical retinoid cycle in rods (twilight vision).
DR Reactome; R-HSA-5365859; RA biosynthesis pathway.
DR SignaLink; Q8IZV5; -.
DR SIGNOR; Q8IZV5; -.
DR UniPathway; UPA00912; -.
DR BioGRID-ORCS; 157506; 15 hits in 1085 CRISPR screens.
DR ChiTaRS; RDH10; human.
DR GenomeRNAi; 157506; -.
DR Pharos; Q8IZV5; Tbio.
DR PRO; PR:Q8IZV5; -.
DR Proteomes; UP000005640; Chromosome 8.
DR RNAct; Q8IZV5; protein.
DR Bgee; ENSG00000121039; Expressed in nasal cavity epithelium and 172 other tissues.
DR ExpressionAtlas; Q8IZV5; baseline and differential.
DR Genevisible; Q8IZV5; HS.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; TAS:Reactome.
DR GO; GO:0016021; C:integral component of membrane; IDA:UniProtKB.
DR GO; GO:0005811; C:lipid droplet; IBA:GO_Central.
DR GO; GO:0004745; F:NAD-retinol dehydrogenase activity; IDA:UniProtKB.
DR GO; GO:0052650; F:NADP-retinol dehydrogenase activity; TAS:Reactome.
DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IBA:GO_Central.
DR GO; GO:0060449; P:bud elongation involved in lung branching; IEA:Ensembl.
DR GO; GO:0043583; P:ear development; IEA:Ensembl.
DR GO; GO:0031076; P:embryonic camera-type eye development; IEA:Ensembl.
DR GO; GO:0035115; P:embryonic forelimb morphogenesis; IEA:Ensembl.
DR GO; GO:0048703; P:embryonic viscerocranium morphogenesis; IEA:Ensembl.
DR GO; GO:0008406; P:gonad development; IEA:Ensembl.
DR GO; GO:0001701; P:in utero embryonic development; IEA:Ensembl.
DR GO; GO:0001656; P:metanephros development; IEA:Ensembl.
DR GO; GO:0014032; P:neural crest cell development; IEA:Ensembl.
DR GO; GO:0043584; P:nose development; IEA:Ensembl.
DR GO; GO:1900054; P:positive regulation of retinoic acid biosynthetic process; IEA:Ensembl.
DR GO; GO:0060431; P:primary lung bud formation; IEA:Ensembl.
DR GO; GO:0042574; P:retinal metabolic process; IDA:UniProtKB.
DR GO; GO:0002138; P:retinoic acid biosynthetic process; IEA:Ensembl.
DR GO; GO:0001523; P:retinoid metabolic process; TAS:Reactome.
DR GO; GO:0042572; P:retinol metabolic process; IDA:UniProtKB.
DR GO; GO:0007601; P:visual perception; IDA:MGI.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR032970; RDH10.
DR InterPro; IPR020904; Sc_DH/Rdtase_CS.
DR InterPro; IPR002347; SDR_fam.
DR PANTHER; PTHR24322:SF731; PTHR24322:SF731; 1.
DR Pfam; PF00106; adh_short; 1.
DR PRINTS; PR00081; GDHRDH.
DR PRINTS; PR00080; SDRFAMILY.
DR SUPFAM; SSF51735; SSF51735; 1.
DR PROSITE; PS00061; ADH_SHORT; 1.
PE 1: Evidence at protein level;
KW Endoplasmic reticulum; Lipid metabolism; Membrane; Microsome; NADP;
KW Oxidoreductase; Reference proteome; Signal-anchor; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..341
FT /note="Retinol dehydrogenase 10"
FT /id="PRO_0000307682"
FT TRANSMEM 3..23
FT /note="Helical; Signal-anchor"
FT /evidence="ECO:0000255"
FT ACT_SITE 210
FT /note="Proton acceptor"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10001"
FT BINDING 40..64
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT BINDING 197
FT /ligand="substrate"
FT /evidence="ECO:0000250"
SQ SEQUENCE 341 AA; 38087 MW; D10ABE05E7D11FC6 CRC64;
MNIVVEFFVV TFKVLWAFVL AAARWLVRPK EKSVAGQVCL ITGAGSGLGR LFALEFARRR
ALLVLWDINT QSNEETAGMV RHIYRDLEAA DAAALQAGNG EEEILPHCNL QVFTYTCDVG
KRENVYLTAE RVRKEVGEVS VLVNNAGVVS GHHLLECPDE LIERTMMVNC HAHFWTTKAF
LPTMLEINHG HIVTVASSLG LFSTAGVEDY CASKFGVVGF HESLSHELKA AEKDGIKTTL
VCPYLVDTGM FRGCRIRKEI EPFLPPLKPD YCVKQAMKAI LTDQPMICTP RLMYIVTFMK
SILPFEAVVC MYRFLGADKC MYPFIAQRKQ ATNNNEAKNG I
