REM12_ARATH
ID REM12_ARATH Reviewed; 446 AA.
AC P0CAP4; Q9SJ97;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 26-MAY-2009, sequence version 1.
DT 03-AUG-2022, entry version 72.
DE RecName: Full=B3 domain-containing protein REM12;
DE AltName: Full=Protein REPRODUCTIVE MERISTEM 12;
GN Name=REM12; OrderedLocusNames=At2g24680; ORFNames=F25P17.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=P0CAP4-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD23881.1; Type=Erroneous gene model prediction; Note=The predicted gene At2g24680 has been split into 2 genes: At2g24680 and At2g24681.; Evidence={ECO:0000305};
CC Sequence=BX819661; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
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DR EMBL; AC006954; AAD23881.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC07612.1; -; Genomic_DNA.
DR EMBL; BX819661; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; F84639; F84639.
DR RefSeq; NP_180044.2; NM_128029.2. [P0CAP4-1]
DR AlphaFoldDB; P0CAP4; -.
DR SMR; P0CAP4; -.
DR STRING; 3702.AT2G24680.2; -.
DR PaxDb; P0CAP4; -.
DR PRIDE; P0CAP4; -.
DR EnsemblPlants; AT2G24680.1; AT2G24680.1; AT2G24680. [P0CAP4-1]
DR GeneID; 817004; -.
DR Gramene; AT2G24680.1; AT2G24680.1; AT2G24680. [P0CAP4-1]
DR KEGG; ath:AT2G24680; -.
DR Araport; AT2G24680; -.
DR HOGENOM; CLU_014437_3_0_1; -.
DR InParanoid; P0CAP4; -.
DR PhylomeDB; P0CAP4; -.
DR PRO; PR:P0CAP4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P0CAP4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 3.
DR Gene3D; 2.40.330.10; -; 3.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR039218; REM_fam.
DR PANTHER; PTHR31674; PTHR31674; 3.
DR Pfam; PF02362; B3; 3.
DR SMART; SM01019; B3; 3.
DR SUPFAM; SSF101936; SSF101936; 3.
DR PROSITE; PS50863; B3; 3.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..446
FT /note="B3 domain-containing protein REM12"
FT /id="PRO_0000375106"
FT DNA_BIND 56..153
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 193..289
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 341..435
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..46
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 295..334
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..46
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 299..313
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 320..334
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 446 AA; 50208 MW; 8537222E003F3968 CRC64;
MVLNSSDLGP SRCDIRDLPA PSSTNDQGKT ELARKKKVKR SNTEIEADAS SSDNSCFVAL
VTASNLRKDA LYLPQDLTSS VGLERKYREI VVTDERERRS WALDLRFNKS SDTFYISRGW
RSFCDENGKK PGGVFVFKLV GNRETPVLSF CSTESINDGT QGHKNNKYNC MELKSKKKRM
RCRDSTSPSQ NRFMTLTLTH DNLIKSRRYL PLSFTRDNGL DKPGMIFLLG KTGRKWEANL
LREASGRIVL TGKGWKEFAM ANGLKSGELF TLEAILEKGT PMLSLVNTQS TNYRSQQGEC
SRDSEKESSI CAEPSRGNKK WKATNNRKER RDSSSAIQNR YVTLTLTPED VRACTLILPS
QFMKANGINK LGKKTLLGQN RKKWFAYLLS KSGFVALGSG WKGFCEANGV KTGESFNLEY
IDEQDTTPVF KFCSNSVEYV KFTSLP
