REM1_ARATH
ID REM1_ARATH Reviewed; 517 AA.
AC Q84J39; Q9ATC8; Q9SB77;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=B3 domain-containing protein REM1;
DE AltName: Full=Protein REPRODUCTIVE MERISTEM 1;
DE Short=AtREM1;
GN Name=REM1; OrderedLocusNames=At4g31610; ORFNames=F28M20.200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND
RP DEVELOPMENTAL STAGE.
RC STRAIN=cv. Landsberg erecta; TISSUE=Flower meristem;
RX PubMed=11842146; DOI=10.1104/pp.010323;
RA Franco-Zorrilla J.M., Cubas P., Jarillo J.A., Fernandez-Calvin B.,
RA Salinas J., Martinez-Zapater J.M.;
RT "AtREM1, a member of a new family of B3 domain-containing genes, is
RT preferentially expressed in reproductive meristems.";
RL Plant Physiol. 128:418-427(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- FUNCTION: May play a role in flower development.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326,
CC ECO:0000269|PubMed:11842146}.
CC -!- TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM), in
CC the inflorescence apex and flowers. {ECO:0000269|PubMed:11842146}.
CC -!- DEVELOPMENTAL STAGE: Not expressed in stage 1 flower. In stage 2 and 3
CC flowers, expressed in the central area of the floral dome, but not in
CC the sepal anlagen. In stage 5 flower, restricted to the carpel anlagen.
CC Stage 6, 7 and 8 flowers, expressed in the medial ridge. In stage 9
CC flower, expressed in the septum, style, and stigma. Shortly before
CC anthesis expressed in the stigma and septum.
CC {ECO:0000269|PubMed:11842146}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA19762.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB79879.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF336344; AAK32148.1; -; mRNA.
DR EMBL; AL031004; CAA19762.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161579; CAB79879.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE85936.1; -; Genomic_DNA.
DR EMBL; BT003891; AAO41939.1; -; mRNA.
DR EMBL; BT005002; AAO50535.1; -; mRNA.
DR PIR; T05109; T05109.
DR RefSeq; NP_567880.1; NM_119310.4.
DR AlphaFoldDB; Q84J39; -.
DR SMR; Q84J39; -.
DR STRING; 3702.AT4G31610.1; -.
DR SwissPalm; Q84J39; -.
DR PaxDb; Q84J39; -.
DR PRIDE; Q84J39; -.
DR ProteomicsDB; 236882; -.
DR EnsemblPlants; AT4G31610.1; AT4G31610.1; AT4G31610.
DR GeneID; 829288; -.
DR Gramene; AT4G31610.1; AT4G31610.1; AT4G31610.
DR KEGG; ath:AT4G31610; -.
DR Araport; AT4G31610; -.
DR TAIR; locus:2124834; AT4G31610.
DR HOGENOM; CLU_014437_0_0_1; -.
DR InParanoid; Q84J39; -.
DR PhylomeDB; Q84J39; -.
DR PRO; PR:Q84J39; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q84J39; baseline and differential.
DR Genevisible; Q84J39; AT.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEP:UniProtKB.
DR GO; GO:0009561; P:megagametogenesis; IGI:TAIR.
DR GO; GO:0009555; P:pollen development; IGI:TAIR.
DR CDD; cd10017; B3_DNA; 3.
DR Gene3D; 2.40.330.10; -; 3.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR039218; REM_fam.
DR PANTHER; PTHR31674; PTHR31674; 1.
DR Pfam; PF02362; B3; 2.
DR SMART; SM01019; B3; 3.
DR SUPFAM; SSF101936; SSF101936; 3.
DR PROSITE; PS50863; B3; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..517
FT /note="B3 domain-containing protein REM1"
FT /id="PRO_0000375095"
FT DNA_BIND 7..92
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 162..259
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 285..385
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 115..158
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 393..415
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 115..141
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 142..156
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 393..409
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 29
FT /note="L -> F (in Ref. 1; AAK32148)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 517 AA; 58388 MW; FCE6495B53E55081 CRC64;
MADPPHFSLF QQKFRTGDKP FLTLDADFLM NHTKVLLKSD ASDKVWKVKL DGGRLSEGWE
EFACDQKFRD GDVLVFKHHG DEVFHVAVVS PSVSGDIRNA SSSQVITEDT YIDVDDVDDD
DYGQDDEDDD DDDDEGEDNI ENISEKTDKR QEADSSSDHS GFITARVTRY SLLHDRLDLS
RNFTLLFGGH QKTCEIDVVD EQGRRWTMKL AKNISSGVFY IRLGWGNFCC ANGLTQGDLC
KFKLFQNEER PVLWLCPQES GNGRKEKRTF DEVSKGKEKK TPSPFLIVKY TPSRETTGQL
SLPVSFTRNN SINKTGEVIL LNQDGRKWSS YLQITGLGRG AGSEWFYLRR GWREMCEANG
VGVNDSFKLE LVWEGANPMF KFCSKIENHE YKGKGNQRTR KKRACETAPQ PRNVKKTPRL
GVEGPVYQVD EERGHTQVSN RTNTISGNLQ RLLPPSCSVS DQVANVKQGI VDSLNTVRQC
RTELETSEQN LQASLLAIDA LGERIWGISK ILSSNLV
