REM20_ARATH
ID REM20_ARATH Reviewed; 286 AA.
AC Q8LAV5; Q9LFI6;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=B3 domain-containing protein REM20;
DE AltName: Full=Protein REPRODUCTIVE MERISTEM 20;
GN Name=REM20; OrderedLocusNames=At3g53310; ORFNames=F4P12.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clone.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- INTERACTION:
CC Q8LAV5; P46603: HAT9; NbExp=3; IntAct=EBI-15192159, EBI-15192157;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB67638.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL132966; CAB67638.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79067.1; -; Genomic_DNA.
DR EMBL; BT025724; ABF82627.1; -; mRNA.
DR EMBL; AB493647; BAH30485.1; -; mRNA.
DR EMBL; AY087586; AAM65128.1; -; mRNA.
DR PIR; T45871; T45871.
DR RefSeq; NP_566984.1; NM_115191.4.
DR AlphaFoldDB; Q8LAV5; -.
DR SMR; Q8LAV5; -.
DR BioGRID; 9816; 12.
DR IntAct; Q8LAV5; 12.
DR STRING; 3702.AT3G53310.1; -.
DR PaxDb; Q8LAV5; -.
DR PRIDE; Q8LAV5; -.
DR ProteomicsDB; 236883; -.
DR EnsemblPlants; AT3G53310.1; AT3G53310.1; AT3G53310.
DR GeneID; 824499; -.
DR Gramene; AT3G53310.1; AT3G53310.1; AT3G53310.
DR KEGG; ath:AT3G53310; -.
DR Araport; AT3G53310; -.
DR TAIR; locus:2083921; AT3G53310.
DR eggNOG; ENOG502S4ID; Eukaryota.
DR HOGENOM; CLU_048511_2_0_1; -.
DR InParanoid; Q8LAV5; -.
DR OMA; VHTIKIT; -.
DR OrthoDB; 1126273at2759; -.
DR PhylomeDB; Q8LAV5; -.
DR PRO; PR:Q8LAV5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q8LAV5; baseline and differential.
DR Genevisible; Q8LAV5; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR.
DR GO; GO:2000028; P:regulation of photoperiodism, flowering; IMP:TAIR.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..286
FT /note="B3 domain-containing protein REM20"
FT /id="PRO_0000375113"
FT DNA_BIND 9..102
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 117..161
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 121..161
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 286 AA; 32618 MW; E99208501B9ECE43 CRC64;
MADDSELYPR FFKVFLVESA SESLMIPLPF MAFLADPLPK TVKLQGLGGK LWTVSLKKIS
GAAYLTRGWP KFAEEHELKN GEFMTFVYDG HRTFEVSVFD RWGSKEVRAE IQAIPLSDSD
SDSVVEDEKD STDVVEDDDD EDEDEDEDDD GSFDEDEEIS QSLYPIDEET ATDAAVFEGN
LDVEALTNPH FPTTLKNRIY ELLIPANVVK DNNLEFGSSI KYIDGEGTLV GLRGKWADKR
VCFKGWDRIC RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRDA
