REM8_ARATH
ID REM8_ARATH Reviewed; 462 AA.
AC Q8H2D1; O81779;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 25-MAY-2022, entry version 121.
DE RecName: Full=B3 domain-containing protein REM8;
DE AltName: Full=Auxin response factor 24;
DE AltName: Full=Protein REPRODUCTIVE MERISTEM 8;
GN Name=REM8; Synonyms=ARF24; OrderedLocusNames=At4g31680;
GN ORFNames=F28M20.130;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Carabelli M.;
RT "Nucleotide sequence of the putative Arabidopsis ARF24.";
RL Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA19755.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB79886.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL031004; CAA19755.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161579; CAB79886.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE85944.1; -; Genomic_DNA.
DR EMBL; AJ515262; CAD56214.1; -; mRNA.
DR PIR; T05102; T05102.
DR RefSeq; NP_194896.2; NM_119317.3.
DR AlphaFoldDB; Q8H2D1; -.
DR SMR; Q8H2D1; -.
DR BioGRID; 14582; 1.
DR IntAct; Q8H2D1; 1.
DR STRING; 3702.AT4G31680.1; -.
DR PaxDb; Q8H2D1; -.
DR PRIDE; Q8H2D1; -.
DR EnsemblPlants; AT4G31680.1; AT4G31680.1; AT4G31680.
DR GeneID; 829296; -.
DR Gramene; AT4G31680.1; AT4G31680.1; AT4G31680.
DR KEGG; ath:AT4G31680; -.
DR Araport; AT4G31680; -.
DR TAIR; locus:2124824; AT4G31680.
DR eggNOG; ENOG502STJ8; Eukaryota.
DR HOGENOM; CLU_014437_0_0_1; -.
DR InParanoid; Q8H2D1; -.
DR OMA; CWHTERK; -.
DR OrthoDB; 246503at2759; -.
DR PhylomeDB; Q8H2D1; -.
DR PRO; PR:Q8H2D1; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8H2D1; baseline and differential.
DR Genevisible; Q8H2D1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 3.
DR Gene3D; 2.40.330.10; -; 3.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR039218; REM_fam.
DR PANTHER; PTHR31674; PTHR31674; 2.
DR Pfam; PF02362; B3; 3.
DR SMART; SM01019; B3; 3.
DR SUPFAM; SSF101936; SSF101936; 3.
DR PROSITE; PS50863; B3; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..462
FT /note="B3 domain-containing protein REM8"
FT /id="PRO_0000375102"
FT DNA_BIND 11..103
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 148..243
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 249..346
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 351..419
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 351..397
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 398..419
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 462 AA; 52025 MW; FCAB20E827D1F5E4 CRC64;
MANASQLSPT NKHFFKPLLP GFQRNLNIPV KFFSEHIEGK HEGETVKLRA DASKRTWEVK
MDGNRLTEGW KEFVEAHDLR IRDFVVFRHE GDMVFHVTAL GPSCCEIQYP QSISHEEGEE
SGEVEISERE VEENLQKEYD QSSADLNCFS QSVTHSNISN DLVTLPRDFA KRNGLDKGMH
EIVLMNEEGK SWESEVRSRM SGQVFIVGGW KSLCSENKLK GGDSCTFKLL QNAKTPVFQL
CSRIGESRFV KLTPTLNSLE IGKQHLPVSF TKGNGLIHPG EIILVDKDRV EWSMKLQVDN
RGGMHIFGGN DWKSFCAANE VGAGESLTLE LIRGGLSPLF KFFSKIEQPS FEAEDRRHKR
ARVHNGSQET DKGEPSRATK MGPELEKREK TAEKGEPSRA SNKSSGKQGN LQKTQACSVT
DHVAKVKESV VDTLTSIRRF QAELETMEQK LEDSLQEINK LS
