RER1_ARATH
ID RER1_ARATH Reviewed; 433 AA.
AC Q9FGP9;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Protein RETICULATA-RELATED 1, chloroplastic {ECO:0000303|PubMed:23596191};
DE Flags: Precursor;
GN Name=RER1 {ECO:0000303|PubMed:23596191};
GN OrderedLocusNames=At5g22790 {ECO:0000312|Araport:AT5G22790};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT VAL-64, CLEAVAGE OF TRANSIT PEPTIDE
RP [LARGE SCALE ANALYSIS] AFTER CYS-63, AND IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
RN [5]
RP FUNCTION, TISSUE SPECIFICITY, GENE FAMILY, NOMENCLATURE, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=23596191; DOI=10.1104/pp.113.217323;
RA Perez-Perez J.M., Esteve-Bruna D., Gonzalez-Bayon R., Kangasjarvi S.,
RA Caldana C., Hannah M.A., Willmitzer L., Ponce M.R., Micol J.L.;
RT "Functional redundancy and divergence within the Arabidopsis RETICULATA-
RT RELATED gene family.";
RL Plant Physiol. 162:589-603(2013).
CC -!- FUNCTION: May play a role in leaf development.
CC {ECO:0000305|PubMed:23596191}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane
CC {ECO:0000250|UniProtKB:Q9C9Z2}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in root vasculature, distal region of
CC young leaf primordia, leaf bundle sheath cells, hydathodes and pollen
CC grains. {ECO:0000269|PubMed:23596191}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:23596191}.
CC -!- SIMILARITY: Belongs to the RETICULATA family. {ECO:0000305}.
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DR EMBL; AB025618; BAB09278.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93076.1; -; Genomic_DNA.
DR EMBL; AF367348; AAK32935.1; -; mRNA.
DR EMBL; AY081723; AAL87376.1; -; mRNA.
DR RefSeq; NP_197671.1; NM_122185.3.
DR AlphaFoldDB; Q9FGP9; -.
DR STRING; 3702.AT5G22790.1; -.
DR iPTMnet; Q9FGP9; -.
DR SwissPalm; Q9FGP9; -.
DR PaxDb; Q9FGP9; -.
DR PRIDE; Q9FGP9; -.
DR ProteomicsDB; 236162; -.
DR EnsemblPlants; AT5G22790.1; AT5G22790.1; AT5G22790.
DR GeneID; 832342; -.
DR Gramene; AT5G22790.1; AT5G22790.1; AT5G22790.
DR KEGG; ath:AT5G22790; -.
DR Araport; AT5G22790; -.
DR TAIR; locus:2158155; AT5G22790.
DR eggNOG; ENOG502QPQK; Eukaryota.
DR HOGENOM; CLU_036961_1_0_1; -.
DR InParanoid; Q9FGP9; -.
DR OMA; PYARFSQ; -.
DR OrthoDB; 1460743at2759; -.
DR PhylomeDB; Q9FGP9; -.
DR PRO; PR:Q9FGP9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FGP9; baseline and differential.
DR Genevisible; Q9FGP9; AT.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009706; C:chloroplast inner membrane; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0099402; P:plant organ development; IBA:GO_Central.
DR InterPro; IPR021825; RETICULATA-related.
DR Pfam; PF11891; RETICULATA-like; 1.
PE 1: Evidence at protein level;
KW Acetylation; Chloroplast; Developmental protein; Membrane; Plastid;
KW Reference proteome; Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..63
FT /note="Chloroplast"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CHAIN 64..433
FT /note="Protein RETICULATA-RELATED 1, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000433440"
FT TRANSMEM 249..269
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 323..343
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 93..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 64
FT /note="N-acetylvaline"
FT /evidence="ECO:0007744|PubMed:22223895"
SQ SEQUENCE 433 AA; 46832 MW; E5422EFF3708FC51 CRC64;
MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR
NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD GDGGDENGNN DGGGNGGNGD
GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK
LFLLRYLDLQ GSVWPLGFLM RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG
EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP
PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI PVVAMAFTVG VRFANNVYGG
MQFVDWAKLS GVQ
