RF1_METMA
ID RF1_METMA Reviewed; 415 AA.
AC Q8PX75;
DT 10-OCT-2002, integrated into UniProtKB/Swiss-Prot.
DT 10-OCT-2002, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Peptide chain release factor subunit 1 {ECO:0000255|HAMAP-Rule:MF_00424};
DE AltName: Full=Translation termination factor aRF1 {ECO:0000255|HAMAP-Rule:MF_00424};
GN Name=prf1 {ECO:0000255|HAMAP-Rule:MF_00424}; OrderedLocusNames=MM_1347;
OS Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
OS 11833 / OCM 88) (Methanosarcina frisia).
OC Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC Methanosarcinales; Methanosarcinaceae; Methanosarcina.
OX NCBI_TaxID=192952;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88;
RX PubMed=12125824;
RA Deppenmeier U., Johann A., Hartsch T., Merkl R., Schmitz R.A.,
RA Martinez-Arias R., Henne A., Wiezer A., Baeumer S., Jacobi C.,
RA Brueggemann H., Lienard T., Christmann A., Boemecke M., Steckel S.,
RA Bhattacharyya A., Lykidis A., Overbeek R., Klenk H.-P., Gunsalus R.P.,
RA Fritz H.-J., Gottschalk G.;
RT "The genome of Methanosarcina mazei: evidence for lateral gene transfer
RT between Bacteria and Archaea.";
RL J. Mol. Microbiol. Biotechnol. 4:453-461(2002).
CC -!- FUNCTION: Directs the termination of nascent peptide synthesis
CC (translation) in response to the termination codons UAA, UAG and UGA.
CC {ECO:0000255|HAMAP-Rule:MF_00424}.
CC -!- SUBUNIT: Heterodimer of two subunits, one of which binds GTP.
CC {ECO:0000255|HAMAP-Rule:MF_00424}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00424}.
CC -!- SIMILARITY: Belongs to the eukaryotic release factor 1 family.
CC {ECO:0000255|HAMAP-Rule:MF_00424}.
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DR EMBL; AE008384; AAM31043.1; -; Genomic_DNA.
DR RefSeq; WP_011033293.1; NC_003901.1.
DR PDB; 3IR9; X-ray; 2.21 A; A/B=252-415.
DR PDBsum; 3IR9; -.
DR AlphaFoldDB; Q8PX75; -.
DR SMR; Q8PX75; -.
DR STRING; 192952.MM_1347; -.
DR DNASU; 1479689; -.
DR EnsemblBacteria; AAM31043; AAM31043; MM_1347.
DR GeneID; 24879663; -.
DR KEGG; mma:MM_1347; -.
DR PATRIC; fig|192952.21.peg.1561; -.
DR eggNOG; arCOG01742; Archaea.
DR HOGENOM; CLU_035759_3_0_2; -.
DR OMA; GQEMEVV; -.
DR EvolutionaryTrace; Q8PX75; -.
DR Proteomes; UP000000595; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.1330.30; -; 1.
DR Gene3D; 3.30.420.60; -; 1.
DR Gene3D; 3.30.960.10; -; 1.
DR HAMAP; MF_00424; Rel_fact_arch_1; 1.
DR InterPro; IPR042226; eFR1_2_sf.
DR InterPro; IPR005140; eRF1_1_Pelota.
DR InterPro; IPR024049; eRF1_1_sf.
DR InterPro; IPR005141; eRF1_2.
DR InterPro; IPR005142; eRF1_3.
DR InterPro; IPR029064; L30e-like.
DR InterPro; IPR020918; Peptide_chain-rel_aRF1.
DR InterPro; IPR004403; Peptide_chain-rel_eRF1/aRF1.
DR PANTHER; PTHR10113; PTHR10113; 1.
DR Pfam; PF03463; eRF1_1; 1.
DR Pfam; PF03464; eRF1_2; 1.
DR Pfam; PF03465; eRF1_3; 1.
DR SMART; SM01194; eRF1_1; 1.
DR SUPFAM; SSF55315; SSF55315; 1.
DR SUPFAM; SSF55481; SSF55481; 1.
DR TIGRFAMs; TIGR03676; aRF1/eRF1; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; Protein biosynthesis; Reference proteome.
FT CHAIN 1..415
FT /note="Peptide chain release factor subunit 1"
FT /id="PRO_0000143176"
FT HELIX 259..290
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 296..299
FT /evidence="ECO:0007829|PDB:3IR9"
FT HELIX 300..307
FT /evidence="ECO:0007829|PDB:3IR9"
FT TURN 308..310
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 312..318
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 324..334
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 336..341
FT /evidence="ECO:0007829|PDB:3IR9"
FT TURN 356..358
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 361..369
FT /evidence="ECO:0007829|PDB:3IR9"
FT HELIX 370..380
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 384..388
FT /evidence="ECO:0007829|PDB:3IR9"
FT HELIX 393..400
FT /evidence="ECO:0007829|PDB:3IR9"
FT STRAND 405..411
FT /evidence="ECO:0007829|PDB:3IR9"
SQ SEQUENCE 415 AA; 46190 MW; 97EDFE1C4411E816 CRC64;
MTEQSAHEKY EFKKKLEGLR DKKGRSTELI SLYIPPDKQI FDVTNQLKDE HGQAANIKSK
LTRTNVQGAI ESLLSRLRYL DKVPENGIVY FTGAVDIGAN KTSMESEVIV PPDPITVYKY
HCDSSFYLEP LEDMLKDKNT YGLLVLDRRE ATIGLLVGKR IQPFRNLTST VPGKQRKGGQ
SAHRFQQLRL IAIHDFYKRI GDAASEVFMA VDHKDLKGVL IGGPSPTKEE FHAGEFLHHE
LMKKILGLFD TAYTDESGLS ELVNAAGEKL QDLELMGQKN AVRDFFKELI ADSGKVAYGE
SQVRANLEIN SVDVLLLSED LRAERVTTKC SVCGYENKWT RRWKPGEPAP AAGNCPKCGS
SLEVTDVTDI VDEFSELADK SNAKVVFVST DFDEGSQLMN AFGGIAAILR YNTGV