RF2_BACSU
ID RF2_BACSU Reviewed; 366 AA.
AC P28367; O34444;
DT 01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
DT 15-DEC-1998, sequence version 2.
DT 03-AUG-2022, entry version 143.
DE RecName: Full=Peptide chain release factor 2;
DE Short=RF-2;
GN Name=prfB; OrderedLocusNames=BSU35290;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=9696765; DOI=10.1128/jb.180.16.4166-4170.1998;
RA Karow M.L., Rogers E.J., Lovett P.S., Piggot P.J.;
RT "Suppression of TGA mutations in the Bacillus subtilis spoIIR gene by prfB
RT mutations.";
RL J. Bacteriol. 180:4166-4170(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Lazarevic V., Soldo B., Rivolta C., Reynolds S., Mauel C., Karamata D.;
RT "Nucleotide sequence of the 300-304 chromosomal segment of Bacillus
RT subtilis.";
RL Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-338.
RC STRAIN=168 / Marburg / ATCC 6051 / DSM 10 / JCM 1465 / NBRC 13719 / NCIMB
RC 3610 / NRRL NRS-744 / VKM B-501;
RX PubMed=1901557; DOI=10.1016/0378-1119(91)90110-w;
RA Sadaie Y., Takamatsu H., Nakamura K., Yamane K.;
RT "Sequencing reveals similarity of the wild-type div+ gene of Bacillus
RT subtilis to the Escherichia coli secA gene.";
RL Gene 98:101-105(1991).
RN [5]
RP PROBABLE FUNCTION, AND RIBOSOMAL FRAMESHIFT.
RX PubMed=1408743; DOI=10.1093/nar/20.17.4423;
RA Pel H.J., Rep M., Grivell L.A.;
RT "Sequence comparison of new prokaryotic and mitochondrial members of the
RT polypeptide chain release factor family predicts a five-domain model for
RT release factor structure.";
RL Nucleic Acids Res. 20:4423-4428(1992).
CC -!- FUNCTION: Peptide chain release factor 2 directs the termination of
CC translation in response to the peptide chain termination codons UGA and
CC UAA.
CC -!- SUBCELLULAR LOCATION: Cytoplasm.
CC -!- PTM: Methylated by PrmC. Methylation increases the termination
CC efficiency of RF2 (By similarity). {ECO:0000250}.
CC -!- MISCELLANEOUS: The gene for this protein contains a UGA in-frame
CC termination codon after Leu-24; a naturally occurring frameshift
CC enables complete translation of RF-2. This provides a mechanism for the
CC protein to regulate its own production.
CC -!- SIMILARITY: Belongs to the prokaryotic/mitochondrial release factor
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA01123.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AF013188; AAC97534.1; -; Genomic_DNA.
DR EMBL; AF017113; AAC67303.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB15546.1; -; Genomic_DNA.
DR EMBL; D10279; BAA01123.1; ALT_INIT; Genomic_DNA.
DR PIR; H69681; JN0146.
DR RefSeq; NP_391409.1; NC_000964.3.
DR RefSeq; WP_010886623.1; NZ_JNCM01000033.1.
DR PDB; 6SZS; EM; 3.06 A; z=5-366.
DR PDBsum; 6SZS; -.
DR AlphaFoldDB; P28367; -.
DR SMR; P28367; -.
DR STRING; 224308.BSU35290; -.
DR PaxDb; P28367; -.
DR PRIDE; P28367; -.
DR EnsemblBacteria; CAB15546; CAB15546; BSU_35290.
DR GeneID; 936692; -.
DR KEGG; bsu:BSU35290; -.
DR PATRIC; fig|224308.43.peg.3694; -.
DR eggNOG; COG1186; Bacteria.
DR InParanoid; P28367; -.
DR OMA; YVFHPYQ; -.
DR PhylomeDB; P28367; -.
DR BioCyc; BSUB:BSU35290-MON; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR HAMAP; MF_00094; Rel_fac_2; 1.
DR InterPro; IPR005139; PCRF.
DR InterPro; IPR000352; Pep_chain_release_fac_I.
DR InterPro; IPR045853; Pep_chain_release_fac_I_sf.
DR InterPro; IPR004374; PrfB.
DR Pfam; PF03462; PCRF; 1.
DR Pfam; PF00472; RF-1; 1.
DR SMART; SM00937; PCRF; 1.
DR SUPFAM; SSF75620; SSF75620; 1.
DR TIGRFAMs; TIGR00020; prfB; 1.
DR PROSITE; PS00745; RF_PROK_I; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; Methylation; Protein biosynthesis;
KW Reference proteome; Ribosomal frameshifting.
FT CHAIN 1..366
FT /note="Peptide chain release factor 2"
FT /id="PRO_0000166803"
FT MOD_RES 251
FT /note="N5-methylglutamine"
FT /evidence="ECO:0000250"
FT CONFLICT 338
FT /note="T -> D (in Ref. 4; BAA01123)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 366 AA; 42073 MW; FB42BE654541D6E2 CRC64;
MELSEIRAEL ENMASRLADF RGSLDLESKE ARIAELDEQM ADPEFWNDQQ KAQTVINEAN
GLKDYVNSYK KLNESHEELQ MTHDLLKEEP DTDLQLELEK ELKSLTKEFN EFELQLLLSE
PYDKNNAILE LHPGAGGTES QDWGSMLLRM YTRWGERRGF KVETLDYLPG DEAGIKSVTL
LIKGHNAYGY LKAEKGVHRL VRISPFDSSG RRHTSFVSCE VMPEFNDEID IDIRTEDIKV
DTYRASGAGG QHVNTTDSAV RITHLPTNVV VTCQTERSQI KNRERAMKML KAKLYQRRIE
EQQAELDEIR GEQKEIGWGS QIRSYVFHPY SMVKDHRTNT EMGNVQAVMD GDIDTFIDAY
LRSKLS