RF3_BUCAI
ID RF3_BUCAI Reviewed; 526 AA.
AC P57608;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Peptide chain release factor 3;
DE Short=RF-3;
GN Name=prfC; OrderedLocusNames=BU543;
OS Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon
OS pisum symbiotic bacterium).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Erwiniaceae; Buchnera.
OX NCBI_TaxID=107806;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=APS;
RX PubMed=10993077; DOI=10.1038/35024074;
RA Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.;
RT "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera
RT sp. APS.";
RL Nature 407:81-86(2000).
CC -!- FUNCTION: Increases the formation of ribosomal termination complexes
CC and stimulates activities of RF-1 and RF-2. It binds guanine
CC nucleotides and has strong preference for UGA stop codons. It may
CC interact directly with the ribosome. The stimulation of RF-1 and RF-2
CC is significantly reduced by GTP and GDP, but not by GMP (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. PrfC subfamily.
CC {ECO:0000305}.
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DR EMBL; BA000003; BAB13235.1; -; Genomic_DNA.
DR RefSeq; NP_240349.1; NC_002528.1.
DR RefSeq; WP_010896156.1; NC_002528.1.
DR AlphaFoldDB; P57608; -.
DR SMR; P57608; -.
DR STRING; 107806.10039201; -.
DR EnsemblBacteria; BAB13235; BAB13235; BAB13235.
DR KEGG; buc:BU543; -.
DR PATRIC; fig|107806.10.peg.547; -.
DR eggNOG; COG4108; Bacteria.
DR HOGENOM; CLU_002794_2_1_6; -.
DR OMA; GFVFKIH; -.
DR Proteomes; UP000001806; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR GO; GO:0006449; P:regulation of translational termination; IEA:UniProtKB-UniRule.
DR CDD; cd04169; RF3; 1.
DR Gene3D; 3.30.70.3280; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00072; Rel_fac_3; 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR031157; G_TR_CS.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR004548; PrfC.
DR InterPro; IPR032090; RF3_C.
DR InterPro; IPR038467; RF3_dom_3_sf.
DR InterPro; IPR041732; RF3_GTP-bd.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43556; PTHR43556; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF16658; RF3_C; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SUPFAM; SSF50447; SSF50447; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF54980; SSF54980; 1.
DR TIGRFAMs; TIGR00503; prfC; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS00301; G_TR_1; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 3: Inferred from homology;
KW Cytoplasm; GTP-binding; Nucleotide-binding; Protein biosynthesis;
KW Reference proteome.
FT CHAIN 1..526
FT /note="Peptide chain release factor 3"
FT /id="PRO_0000210933"
FT DOMAIN 11..277
FT /note="tr-type G"
FT BINDING 20..27
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 88..92
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 142..145
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
SQ SEQUENCE 526 AA; 60359 MW; 87FD35127309C04B CRC64;
MFDSNHEQEL SKRRTFAIIS HPDAGKTTIT EKMLFFGKVI RVPGTIKGRG SGKYAKSDWM
NIEKERGISI TTSVMQFTYK NILMNLLDTP GHQDFSEDTY RILTAVDCCL VVIDAAKGIE
ERTRKLMDVA RIHNTPIITF INKLDRDSRD PIEILDEIEK ELKLHCIPIS WPISCGKNFR
GVYHIYDKII HLYKSKFRKN FLTLDSFLDG SLNEYLGADL SIHIRQELEL IMNVYSKFNK
EKFLKGITTP IFFGSALGNF GIDHLLDSLI KWAPSPLYRQ SNKRIIKPQE RKFTGFIFKI
QANMDLKHRD RIAFMRIVSG QYTKGMKLTH VRIKKNIIIS DAFSFLAGER ISINKAYPGD
VIGLHNHGTI KIGDTFTQGE EIKFIGIPSF APEIFRLIYL KNPLKQKQLK KGLVQLSEEG
TVQVFRPILN NDLILGAIGI LQFDVVIERL RIEYNIDAVY KKVNIVLARW INYGNHHSLY
NLKKSYSSYL AYDISNSLIY LAPSSANLNI VMSQNSDISF NATREQ