RF3_SYNY3
ID RF3_SYNY3 Reviewed; 547 AA.
AC P73473;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Peptide chain release factor 3;
DE Short=RF-3;
GN Name=prfC; OrderedLocusNames=slr1228;
OS Synechocystis sp. (strain PCC 6803 / Kazusa).
OC Bacteria; Cyanobacteria; Synechococcales; Merismopediaceae; Synechocystis;
OC unclassified Synechocystis.
OX NCBI_TaxID=1111708;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PCC 6803 / Kazusa;
RX PubMed=8905231; DOI=10.1093/dnares/3.3.109;
RA Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y.,
RA Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T.,
RA Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.,
RA Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence analysis of the genome of the unicellular cyanobacterium
RT Synechocystis sp. strain PCC6803. II. Sequence determination of the entire
RT genome and assignment of potential protein-coding regions.";
RL DNA Res. 3:109-136(1996).
CC -!- FUNCTION: Increases the formation of ribosomal termination complexes
CC and stimulates activities of RF-1 and RF-2. It binds guanine
CC nucleotides and has strong preference for UGA stop codons. It may
CC interact directly with the ribosome. The stimulation of RF-1 and RF-2
CC is significantly reduced by GTP and GDP, but not by GMP (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. PrfC subfamily.
CC {ECO:0000305}.
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DR EMBL; BA000022; BAA17513.1; -; Genomic_DNA.
DR PIR; S77410; S77410.
DR AlphaFoldDB; P73473; -.
DR SMR; P73473; -.
DR STRING; 1148.1652592; -.
DR PaxDb; P73473; -.
DR EnsemblBacteria; BAA17513; BAA17513; BAA17513.
DR KEGG; syn:slr1228; -.
DR eggNOG; COG4108; Bacteria.
DR InParanoid; P73473; -.
DR OMA; GFVFKIH; -.
DR PhylomeDB; P73473; -.
DR Proteomes; UP000001425; Chromosome.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0016150; F:translation release factor activity, codon nonspecific; IBA:GO_Central.
DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR GO; GO:0006449; P:regulation of translational termination; IEA:UniProtKB-UniRule.
DR GO; GO:0006415; P:translational termination; IBA:GO_Central.
DR CDD; cd04169; RF3; 1.
DR Gene3D; 3.30.70.3280; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00072; Rel_fac_3; 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR031157; G_TR_CS.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR004548; PrfC.
DR InterPro; IPR032090; RF3_C.
DR InterPro; IPR038467; RF3_dom_3_sf.
DR InterPro; IPR041732; RF3_GTP-bd.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43556; PTHR43556; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF16658; RF3_C; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SUPFAM; SSF50447; SSF50447; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF54980; SSF54980; 1.
DR TIGRFAMs; TIGR00503; prfC; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS00301; G_TR_1; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 3: Inferred from homology;
KW Cytoplasm; GTP-binding; Nucleotide-binding; Protein biosynthesis;
KW Reference proteome.
FT CHAIN 1..547
FT /note="Peptide chain release factor 3"
FT /id="PRO_0000210978"
FT DOMAIN 24..294
FT /note="tr-type G"
FT BINDING 33..40
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 101..105
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 155..158
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
SQ SEQUENCE 547 AA; 61189 MW; 90D1B99DC7867004 CRC64;
MQTSPSSTAP CADKALDDLL KEVDRRRNFA IISHPDAGKT TLTEKLLLYG GAIQEAGAVK
ARRSQRSATS DWMAMEQQRG ISITSTVLQF DYRGKILNLL DTPGHQDFSE DTYRTLAAAD
NAVMLIDAAK GLETQTRKLF EVCRLRHLPI FTFINKLDRP SLTPLELMDE IEQELGMNTY
AVNYPIGTGD RFRGVYNRLT KTIHLFERTG THGSKKAADQ TMALDDPALE SLLGSDVYAE
FQDELELIEE AGAEFDLAAV HGGEMTPVFF GSAMNNFGVE LFLQAFLQYA AKPEAHDSNR
GTIEPTYEEF SGFVFKLQAN MDPKHRDRIA FLRVCSGKFE KDMVVKHPRT GKTVRLSRPQ
KLFAQERESV DIAYAGDVIG LNNPGAFTIG DTVHTGEKII YPPIPSFSPE LFAYLRSTDP
SQYKNFKKGV SELQEEGAVQ ILQSLDESKR DPILAAVGQL QFEVVQYRLQ EEYGVETRLE
PLGFSLARWV VEGWDALEKA GRLFNTVVVK DRWDAPVLLF KNQWNLEQVA GDCLDLKLSA
IAIPPSL