RFT1_ORYSJ
ID RFT1_ORYSJ Reviewed; 178 AA.
AC Q8VWH2; C0SSC5; Q8H2G4;
DT 13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Protein RICE FLOWERING LOCUS T 1 {ECO:0000305};
DE AltName: Full=FLOWERING LOCUS T-like protein 3 {ECO:0000305};
DE Short=FT-like protein 3 {ECO:0000305};
DE Short=OsFTL3;
GN Name=RFT1 {ECO:0000303|PubMed:12407188}; Synonyms=FTL3 {ECO:0000305};
GN OrderedLocusNames=Os06g0157500, LOC_Os06g06300;
GN ORFNames=OsJ_20189, P0046E09.26, P0702F05.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12407188; DOI=10.1093/pcp/pcf156;
RA Kojima S., Takahashi Y., Kobayashi Y., Monna L., Sasaki T., Araki T.,
RA Yano M.;
RT "Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to
RT flowering downstream of Hd1 under short-day conditions.";
RL Plant Cell Physiol. 43:1096-1105(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Taichung 65;
RX PubMed=18305920; DOI=10.1007/s00122-008-0729-z;
RA Mikami I., Uwatoko N., Ikeda Y., Yamaguchi J., Hirano H.Y., Suzuki Y.,
RA Sano Y.;
RT "Allelic diversification at the wx locus in landraces of Asian rice.";
RL Theor. Appl. Genet. 116:979-989(2008).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Taichung 65;
RX PubMed=19298266; DOI=10.1111/j.1365-294x.2009.04119.x;
RA Hagiwara W.E., Uwatoko N., Sasaki A., Matsubara K., Nagano H., Onishi K.,
RA Sano Y.;
RT "Diversification in flowering time due to tandem FT-like gene duplication,
RT generating novel Mendelian factors in wild and cultivated rice.";
RL Mol. Ecol. 18:1537-1549(2009).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=18223202; DOI=10.1242/dev.008631;
RA Komiya R., Ikegami A., Tamaki S., Yokoi S., Shimamoto K.;
RT "Hd3a and RFT1 are essential for flowering in rice.";
RL Development 135:767-774(2008).
RN [9]
RP FUNCTION, AND INDUCTION.
RX PubMed=19762423; DOI=10.1242/dev.040170;
RA Komiya R., Yokoi S., Shimamoto K.;
RT "A gene network for long-day flowering activates RFT1 encoding a mobile
RT flowering signal in rice.";
RL Development 136:3443-3450(2009).
RN [10]
RP FUNCTION, INTERACTION WITH FTIP1, SUBCELLULAR LOCATION, AND TISSUE
RP SPECIFICITY.
RX PubMed=28254780; DOI=10.1105/tpc.16.00728;
RA Song S., Chen Y., Liu L., Wang Y., Bao S., Zhou X., Teo Z.W., Mao C.,
RA Gan Y., Yu H.;
RT "OsFTIP1-mediated regulation of florigen transport in rice is negatively
RT regulated by the ubiquitin-like domain kinase OsUbDKgamma4.";
RL Plant Cell 29:491-507(2017).
CC -!- FUNCTION: Probable mobile flower-promoting signal (florigen) that moves
CC from the leaf to the shoot apical meristem (SAM) and induces flowering.
CC Promotes the transition from vegetative growth to flowering under long
CC day (LD) conditions. Acts upstream of MADS14 and MADS15. May also
CC participate in the promotion of flowering under short day (SD)
CC conditions. {ECO:0000269|PubMed:18223202, ECO:0000269|PubMed:19762423,
CC ECO:0000269|PubMed:28254780}.
CC -!- SUBUNIT: Interacts with FTIP1. {ECO:0000269|PubMed:28254780}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. Nucleus
CC {ECO:0000269|PubMed:28254780}. Endoplasmic reticulum
CC {ECO:0000269|PubMed:28254780}.
CC -!- TISSUE SPECIFICITY: Expressed in leaf vascular tissues
CC (PubMed:18223202). Specifically expressed in the phloem including
CC companion cells (PubMed:28254780). {ECO:0000269|PubMed:18223202,
CC ECO:0000269|PubMed:28254780}.
CC -!- INDUCTION: Expressed with a circadian rhythm showing a peak at dawn and
CC then decreasing to reach the lowest levels early in the night in SD
CC conditions. {ECO:0000269|PubMed:18223202, ECO:0000269|PubMed:19762423}.
CC -!- SIMILARITY: Belongs to the phosphatidylethanolamine-binding protein
CC family. {ECO:0000305}.
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DR EMBL; AB062675; BAB78479.1; -; Genomic_DNA.
DR EMBL; AB062676; BAB78480.1; -; mRNA.
DR EMBL; AB281474; BAF92712.1; -; Genomic_DNA.
DR EMBL; AB426873; BAH30237.1; -; Genomic_DNA.
DR EMBL; AP005828; BAC21277.1; -; Genomic_DNA.
DR EMBL; AP007223; BAD69428.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18773.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96251.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35887.1; -; Genomic_DNA.
DR RefSeq; XP_015642519.1; XM_015787033.1.
DR AlphaFoldDB; Q8VWH2; -.
DR SMR; Q8VWH2; -.
DR STRING; 4530.OS06T0157500-00; -.
DR PaxDb; Q8VWH2; -.
DR PRIDE; Q8VWH2; -.
DR EnsemblPlants; Os06t0157500-01; Os06t0157500-01; Os06g0157500.
DR GeneID; 4340184; -.
DR Gramene; Os06t0157500-01; Os06t0157500-01; Os06g0157500.
DR KEGG; osa:4340184; -.
DR eggNOG; KOG3346; Eukaryota.
DR HOGENOM; CLU_043994_6_1_1; -.
DR InParanoid; Q8VWH2; -.
DR OMA; TGCVMSD; -.
DR OrthoDB; 1557122at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR PlantReactome; R-OSA-8934108; Short day regulated expression of florigens.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q8VWH2; baseline and differential.
DR Genevisible; Q8VWH2; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0008429; F:phosphatidylethanolamine binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0010229; P:inflorescence development; IMP:UniProtKB.
DR GO; GO:0048573; P:photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB.
DR GO; GO:0048510; P:regulation of timing of transition from vegetative to reproductive phase; IMP:UniProtKB.
DR GO; GO:0010228; P:vegetative to reproductive phase transition of meristem; IBA:GO_Central.
DR CDD; cd00866; PEBP_euk; 1.
DR Gene3D; 3.90.280.10; -; 1.
DR InterPro; IPR031095; FT.
DR InterPro; IPR008914; PEBP.
DR InterPro; IPR036610; PEBP-like_sf.
DR InterPro; IPR035810; PEBP_euk.
DR InterPro; IPR001858; Phosphatidylethanolamine-bd_CS.
DR PANTHER; PTHR11362; PTHR11362; 1.
DR PANTHER; PTHR11362:SF113; PTHR11362:SF113; 1.
DR Pfam; PF01161; PBP; 1.
DR SUPFAM; SSF49777; SSF49777; 1.
DR PROSITE; PS01220; PBP; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; Developmental protein; Differentiation; Endoplasmic reticulum;
KW Flowering; Nucleus; Reference proteome.
FT CHAIN 1..178
FT /note="Protein RICE FLOWERING LOCUS T 1"
FT /id="PRO_0000395305"
FT CONFLICT 95
FT /note="P -> S (in Ref. 3; BAH30237)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 178 AA; 19707 MW; B39586CCAD9B5985 CRC64;
MAGSGRDDPL VVGRIVGDVL DPFVRITNLS VSYGARIVSN GCELKPSMVT QQPRVVVGGN
DMRTFYTLVM VDPDAPSPSN PNLREYLHWL VTDIPGTTGA TFGQEVMCYE SPRPTMGIHR
LVFVLFQQLG RQTVYAPGWR QNFSTRNFAE LYNLGSPVAT VYFNCQREAG SGGRRVYP
