RGAPX_ARATH
ID RGAPX_ARATH Reviewed; 376 AA.
AC Q3E875; Q8LEE6; Q94AM7;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 18-MAR-2008, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Uncharacterized Rho GTPase-activating protein At5g61530;
GN OrderedLocusNames=At5g61530; ORFNames=K11J9.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [6]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-59, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC TISSUE=Seedling;
RX PubMed=17586839; DOI=10.1074/mcp.m700164-mcp200;
RA Niittylae T., Fuglsang A.T., Palmgren M.G., Frommer W.B., Schulze W.X.;
RT "Temporal analysis of sucrose-induced phosphorylation changes in plasma
RT membrane proteins of Arabidopsis.";
RL Mol. Cell. Proteomics 6:1711-1726(2007).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q3E875-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q3E875-2; Sequence=VSP_032379;
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DR EMBL; AB012239; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED97480.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97481.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70654.1; -; Genomic_DNA.
DR EMBL; AY045924; AAK76598.1; -; mRNA.
DR EMBL; AY133882; AAM91816.1; -; mRNA.
DR EMBL; AY085460; AAM62686.1; -; mRNA.
DR EMBL; BX831138; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001332245.1; NM_001345479.1. [Q3E875-2]
DR RefSeq; NP_568935.1; NM_125546.3. [Q3E875-1]
DR RefSeq; NP_974973.1; NM_203244.2. [Q3E875-2]
DR AlphaFoldDB; Q3E875; -.
DR SMR; Q3E875; -.
DR BioGRID; 21518; 1.
DR IntAct; Q3E875; 1.
DR STRING; 3702.AT5G61530.1; -.
DR iPTMnet; Q3E875; -.
DR PaxDb; Q3E875; -.
DR PRIDE; Q3E875; -.
DR ProteomicsDB; 236884; -. [Q3E875-1]
DR EnsemblPlants; AT5G61530.1; AT5G61530.1; AT5G61530. [Q3E875-1]
DR EnsemblPlants; AT5G61530.2; AT5G61530.2; AT5G61530. [Q3E875-2]
DR EnsemblPlants; AT5G61530.5; AT5G61530.5; AT5G61530. [Q3E875-2]
DR GeneID; 836274; -.
DR Gramene; AT5G61530.1; AT5G61530.1; AT5G61530. [Q3E875-1]
DR Gramene; AT5G61530.2; AT5G61530.2; AT5G61530. [Q3E875-2]
DR Gramene; AT5G61530.5; AT5G61530.5; AT5G61530. [Q3E875-2]
DR KEGG; ath:AT5G61530; -.
DR Araport; AT5G61530; -.
DR TAIR; locus:2151611; AT5G61530.
DR eggNOG; KOG4270; Eukaryota.
DR HOGENOM; CLU_040482_0_0_1; -.
DR InParanoid; Q3E875; -.
DR OMA; MWQQGDS; -.
DR PhylomeDB; Q3E875; -.
DR PRO; PR:Q3E875; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q3E875; baseline and differential.
DR Genevisible; Q3E875; AT.
DR GO; GO:0005096; F:GTPase activator activity; IEA:UniProtKB-KW.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR Gene3D; 1.10.555.10; -; 1.
DR InterPro; IPR008936; Rho_GTPase_activation_prot.
DR InterPro; IPR000198; RhoGAP_dom.
DR Pfam; PF00620; RhoGAP; 1.
DR SMART; SM00324; RhoGAP; 1.
DR SUPFAM; SSF48350; SSF48350; 1.
DR PROSITE; PS50238; RHOGAP; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; GTPase activation; Phosphoprotein;
KW Reference proteome.
FT CHAIN 1..376
FT /note="Uncharacterized Rho GTPase-activating protein
FT At5g61530"
FT /id="PRO_0000324840"
FT DOMAIN 139..367
FT /note="Rho-GAP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00172"
FT REGION 307..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 59
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:17586839"
FT VAR_SEQ 268..276
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14993207"
FT /id="VSP_032379"
SQ SEQUENCE 376 AA; 41923 MW; D5933042C83A0B03 CRC64;
MPSLISQQWQ ERTSGFFSSS GTKLREAGQT AGSFVGEVAK DAKVNVADVA ERVGSLFKSR
WAILQQPATR HAVQEHLITA AATTGTFVRK GITETKEKVS VGKIKVEEAA KKTAQKSKTI
LTDIERWQKG VASSDVFGVA IEITVQRQES SRPIPLILVK CADYLILTGL NSPNLFKAEG
DRKLIQQLVS AYNQDPRASI PEGVNPVDVA ALLKYYLASL PTPLTTFELY NEIKDARSSI
HRMRQSLQKL SNVNYNTLEF ITALLLRVSQ KSLLNKMDSH SLAMEMAPVI MWREDNRPES
YREYWRRPSR SPKKSNDFET ATPWDLLSDE GEGPDASSSI PLDDIARVDF GAVEVVQCLI
EHHNAIFTDA AETVWR