RH1_ORYSJ
ID RH1_ORYSJ Reviewed; 521 AA.
AC Q0DWT8; B7EXU1; Q6K8Y3;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=DEAD-box ATP-dependent RNA helicase 1;
DE EC=3.6.4.13;
GN OrderedLocusNames=Os02g0795900, LOC_Os02g55260;
GN ORFNames=OJ1004_E04.4, OJ1695_H09.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC family of RNA helicases and controls ATP binding and hydrolysis.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX51/DBP6
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD19076.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=BAD19277.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AP003975; BAD19076.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP004094; BAD19277.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008208; BAF10300.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81361.1; -; Genomic_DNA.
DR EMBL; AK105305; BAG97188.1; -; mRNA.
DR RefSeq; XP_015627339.1; XM_015771853.1.
DR RefSeq; XP_015627340.1; XM_015771854.1.
DR RefSeq; XP_015627342.1; XM_015771856.1.
DR AlphaFoldDB; Q0DWT8; -.
DR SMR; Q0DWT8; -.
DR STRING; 4530.OS02T0795900-01; -.
DR PaxDb; Q0DWT8; -.
DR PRIDE; Q0DWT8; -.
DR EnsemblPlants; Os02t0795900-01; Os02t0795900-01; Os02g0795900.
DR GeneID; 4331005; -.
DR Gramene; Os02t0795900-01; Os02t0795900-01; Os02g0795900.
DR KEGG; osa:4331005; -.
DR eggNOG; KOG0350; Eukaryota.
DR HOGENOM; CLU_003041_15_3_1; -.
DR InParanoid; Q0DWT8; -.
DR OMA; TEQYCVT; -.
DR OrthoDB; 973872at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q0DWT8; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome;
KW RNA-binding.
FT CHAIN 1..521
FT /note="DEAD-box ATP-dependent RNA helicase 1"
FT /id="PRO_0000282505"
FT DOMAIN 72..302
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 330..480
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 495..521
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 36..65
FT /note="Q motif"
FT MOTIF 213..216
FT /note="DEAD box"
FT COMPBIAS 495..514
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 85..92
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 521 AA; 58382 MW; 70C18AEC60F5219A CRC64;
MVVAMATKEE EGGPSSRVPH LPWMRNPVDI DSFSGCPVAH LPRLDPRLVK PLQRMGIESF
FPVQVAAWLE TIGPGAFERD ICINSPTGSG KTLAYALPIV QMLATRKVRC LRALVVLPTR
DLALQVKEVF DAIAPVVGLS VGSAVGQSSI ADEVSNLIEK SKQGLFPSLD EEYIQMEPQT
KVDILVATPG RLMDHISMTK GFSLEHLQYL VVDETDRMLR EAYQSWLPTV IQLTRSSDQN
HSWSDMNGET LLHPLTTIRR SGVERGFKGK SFPRLAKIVL SATLTQDPSK LSQLELQHPL
LLNSGKKRYR IPTKLQSYKL VCKSNLKPLS LIVLLQELRG EKCLVFTSSV ESSHRLSTLL
EFFEDLPFKF SEYSRLQRES TRRKTLDAFK EGKIDVLIGT DRMARGIHID GLRYVINYDM
PPYVKTYIHR AGRTARAGES GSCFTFLRKH EVKAFDKMLK KADNSSCSLH SLPEESVETL
RPVFSSALKK LEESLESEAT KKSKSGDKAP NASKRKRTIN T
