ID   RH29_ORYSI              Reviewed;         851 AA.
AC   A2YV85; Q0J5P3; Q68Q05; Q6ZA73;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   11-SEP-2007, sequence version 2.
DT   03-AUG-2022, entry version 75.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 29;
DE            Short=RNAH;
DE            EC=3.6.4.13;
GN   ORFNames=OsI_028228;
OS   Oryza sativa subsp. indica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39946;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. IR36; TISSUE=Anther;
RA   Yau C.P., Zhuang C.X., Zee S.Y., Yip W.K.;
RT   "Isolation of anther-specific genes during early pollen development in
RT   rice.";
RL   Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. 93-11;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX54/DBP10
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAU01909.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AY644647; AAU01909.1; ALT_INIT; mRNA.
DR   EMBL; CM000133; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   AlphaFoldDB; A2YV85; -.
DR   SMR; A2YV85; -.
DR   STRING; 39946.A2YV85; -.
DR   Proteomes; UP000007015; Chromosome 8.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR012541; DBP10_C.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF08147; DBP10CT; 1.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM01123; DBP10CT; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome;
KW   RNA-binding.
FT   CHAIN           1..851
FT                   /note="DEAD-box ATP-dependent RNA helicase 29"
FT                   /id="PRO_0000302059"
FT   DOMAIN          80..253
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   DOMAIN          277..426
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT   REGION          1..49
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          702..851
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           49..77
FT                   /note="Q motif"
FT   MOTIF           201..204
FT                   /note="DEAD box"
FT   COMPBIAS        28..46
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        771..827
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         93..100
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   CONFLICT        30
FT                   /note="P -> L (in Ref. 1; AAU01909)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        44
FT                   /note="K -> R (in Ref. 1; AAU01909)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        342
FT                   /note="K -> E (in Ref. 1; AAU01909)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        462
FT                   /note="R -> K (in Ref. 1; AAU01909)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   851 AA;  95478 MW;  94214319EA0874B4 CRC64;
     MARLNPSKPS SRGGKPRSSS ADAMAEHKPP PGRPKREGEG ASKKKAKSGG FESMGLCEEV
     YRGVRHKGYR VPTPIQRKAM PLILAGHDIA AMARTGSGKT AAFLVPMIQR LRRHDAGAGI
     RALILSPTRD LATQTLKFAQ QLGKFTDLKI SLIVGGDSME SQFEELAENP DIIIATPGRL
     VHHLAEVEDL NLRTVEYVVF DEADSLFSLG LIQQLHDILH KLSDTRQTLL FSATLPQALA
     DFAKAGLRDP QIVRLDLDKK ISPDLKLAFF TLRQEEKLAA LLYLVRERIS SEEQTIIFVS
     TKHHVEFLNI LFREEGLEPS LSYGAMDQEA RNIHISKFRA RKTMILIVTD VAARGLDIPL
     LDNVVNWDFP AKPKLFVHRV GRVARQGRSG TAYTFVTSED MAYLLDLHLF LSKPLRPAPT
     EEELLKDMEG MNLKIDRALA NGETVYGRFP QTIIDLVSDG IREVINGCTD LIALEKPCTN
     AFHLYLKTRP MPSTESIRRV KDLPREGLHP IFRDVLGSDE LSALAFSERL KSFRPKQTIL
     EAEGEAARGS NQWLDVMKKK REVHEGIINL VHQKNNVDHE PKEELVENIS NWERKDVCGN
     KRKLQSFRDE EYYISSVPQN QHLEAGLSVR ANEGFVENRL DAAVLDLVDD ETSGMQAQKT
     RYHWKKNKFV KLNSGDRVTA TGKIKTESGA KLKPTKTGIY KKWQQKTHRS IDTGRKYGGF
     AEEGASTTGS HQRGNRKHTA AGRGRRYIPN ADVPSEIRNP EQIQKSRQQK AMDIARMKNR
     STKESKFQKF QKNNRRHDGP SKDGKFQKNR RPDGNGKNRR PDGNGKGRGK GKGNANGFGK
     GKGKMKGKGT R