ID   RH47A_ORYSJ             Reviewed;         573 AA.
AC   Q6H874; B7EQR1;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   19-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 111.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 47A;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os02g0636300, LOC_Os02g42406;
GN   ORFNames=OJ1581_H9.6, OsJ_07650 {ECO:0000312|EMBL:EEE57441.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. {ECO:0000305}.
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DR   EMBL; AP004067; BAD25075.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF09436.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS79942.1; -; Genomic_DNA.
DR   EMBL; CM000139; EEE57441.1; -; Genomic_DNA.
DR   EMBL; AK100670; BAG94708.1; -; mRNA.
DR   RefSeq; XP_015622725.1; XM_015767239.1.
DR   RefSeq; XP_015622726.1; XM_015767240.1.
DR   AlphaFoldDB; Q6H874; -.
DR   SMR; Q6H874; -.
DR   BioGRID; 799120; 1.
DR   STRING; 4530.OS02T0636300-01; -.
DR   PaxDb; Q6H874; -.
DR   PRIDE; Q6H874; -.
DR   EnsemblPlants; Os02t0636300-01; Os02t0636300-01; Os02g0636300.
DR   GeneID; 4330083; -.
DR   Gramene; Os02t0636300-01; Os02t0636300-01; Os02g0636300.
DR   KEGG; osa:4330083; -.
DR   eggNOG; KOG0327; Eukaryota.
DR   HOGENOM; CLU_003041_1_3_1; -.
DR   InParanoid; Q6H874; -.
DR   OMA; WGQTSVR; -.
DR   OrthoDB; 973872at2759; -.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000007752; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   Genevisible; Q6H874; OS.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome;
KW   RNA-binding.
FT   CHAIN           1..573
FT                   /note="DEAD-box ATP-dependent RNA helicase 47A"
FT                   /id="PRO_0000282516"
FT   DOMAIN          162..362
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   DOMAIN          421..565
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT   MOTIF           131..159
FT                   /note="Q motif"
FT   MOTIF           293..296
FT                   /note="DEAD box"
FT   BINDING         175..182
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ   SEQUENCE   573 AA;  63285 MW;  BEEB6D980828FE5D CRC64;
     MRLTVGQVHR HVLALASSRS CFVLGDHLPF RMLSLPRVVR FHQTAWHDIQ TVEDKSGPLT
     LASLEVQNKV EYVKKERATR TGGIKPSSRA SALNMKPKVS SFNAKPVKSA LPKSAVLKKT
     LKIDESLFSA KSFEELGLPP LLIDRLNKEG LTAPTEVQSA AIPIISQKHD AVIQSYTGSG
     KTLAYLLPIL SEIGPLKRPT EQDSSDKRSG VEAVIVAPSR ELGMQIVREV EKILGPNDKR
     LVQQLVGGAN RSRQEEALKK NKPIIVVGTP GRISEISAAG KLHTHSCRFL VLDEVDQLLS
     FNYREDMHRI LEHVGRKSGT SSRDILGPLA RRSERQTILV SATIPFSVIR AARSWGHDPV
     LVRAMSVVPL ESITVPRPVL SQPDANSNSP SNSVNQAAVD SLPPSLEHYY CTSKAQHKVD
     TLRRCIHALE AQTVIAFMNN TKPLKDVVFK LEARGMKATE LHGDLGKLAR STVLKKFKDG
     EFRVLVTNEL SARGLDVPEC DLVINLDLPT DSTHYAHRAG RTGRLGRKGT VVTICEETET
     FVVRKMRKQL AVPIKPCEFT EGKLLVHKEE DVE