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RH48_ORYSJ
ID   RH48_ORYSJ              Reviewed;         811 AA.
AC   Q6K7R9; B9F4M0;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 110.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 48;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os02g0826100, LOC_Os02g57980;
GN   ORFNames=OsJ_08955 {ECO:0000312|EMBL:EEE58088.1}, P0452F04.14;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK101090; Type=Frameshift; Evidence={ECO:0000305};
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DR   EMBL; AP004776; BAD23043.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF10498.1; -; Genomic_DNA.
DR   EMBL; AP014958; BAS81691.1; -; Genomic_DNA.
DR   EMBL; CM000139; EEE58088.1; -; Genomic_DNA.
DR   EMBL; AK101090; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015626491.1; XM_015771005.1.
DR   AlphaFoldDB; Q6K7R9; -.
DR   SMR; Q6K7R9; -.
DR   STRING; 4530.OS02T0826100-01; -.
DR   PaxDb; Q6K7R9; -.
DR   PRIDE; Q6K7R9; -.
DR   EnsemblPlants; Os02t0826100-01; Os02t0826100-01; Os02g0826100.
DR   GeneID; 4331214; -.
DR   Gramene; Os02t0826100-01; Os02t0826100-01; Os02g0826100.
DR   KEGG; osa:4331214; -.
DR   eggNOG; KOG0342; Eukaryota.
DR   HOGENOM; CLU_003041_26_6_1; -.
DR   InParanoid; Q6K7R9; -.
DR   OMA; MMPLIAR; -.
DR   OrthoDB; 537587at2759; -.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000007752; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   Genevisible; Q6K7R9; OS.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Coiled coil; Helicase; Hydrolase; Nucleotide-binding;
KW   Reference proteome; RNA-binding.
FT   CHAIN           1..811
FT                   /note="DEAD-box ATP-dependent RNA helicase 48"
FT                   /id="PRO_0000282518"
FT   DOMAIN          373..556
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   DOMAIN          570..740
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT   REGION          1..32
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          93..138
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          286..333
FT                   /evidence="ECO:0000255"
FT   MOTIF           342..370
FT                   /note="Q motif"
FT   MOTIF           504..507
FT                   /note="DEAD box"
FT   COMPBIAS        119..138
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         386..393
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   CONFLICT        233
FT                   /note="L -> F (in Ref. 5; AK101090)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   811 AA;  91802 MW;  6E13798FD57887F2 CRC64;
     MGGGPRTFPG GLSKWQHKRM HEKLARHKER GLLRHEKQLY LARLRSEIRA SRLPAAGASP
     PDDGDGPTSS RAHIRALADR FLLPGAEDLW NEDDGPIHRA DRPRPPRRIV SVGGNGGDRR
     KLDSTKQELP RGGKEPRLAA FNPRRDFQTA APWWWQWSSS SAIPSRTKEA SFCFFGPKRS
     YSVMPLFQAH QESSGTSMVP LIARGLASAR IAPSQLNGER FYSFAAGRFG RKLRPDSSDE
     DDEDISTAKK DMRFARFGAS SEEESGYDEL EARSAIRKKW SSAALRNCDM KKERRALKSY
     EEENNDLAGS FRELREEIKN REVLGAERRR YESRGESLFT NKRFEECGIS PLTVKALTDA
     GYVQTTVVQE TALPMCLEGK DVLVKAKTGT GKSAAFLLPA IESVLNAMKS HTNHRVSPIF
     SLILCPTREL AIQLTAEANV LLKYHQGIGV QSLIGGTRFK LDQRRLESDP CQILVATPGR
     LLDHIENKSS FSVRLMGLKL LVLDEADHLL DLGFRTDIEK IVDSLPRQRQ TLLFSATIPK
     EVRRVSQLVL KRDHVFVDTV GLGAVETPTK VEQLYLVMPH ELHFHMVYRL LREHIDQEVD
     YKVIVFCTTA MVTEFMYIML RDLKLNVREI HSRKPQLYRT RISEEFRDSS RLILVTSDVS
     TRGVNYPGVT LVIQVGVPSD REHYIHRLGR TGREGKSGKG ILLLAPWEEY FLNEIHDLPV
     QKSQTPNIDE EMKRKVDGSI KIVDMSIKEA AYHAWLGYYN SIGDVGRDKT MLVDLANRFC
     KSIGLEKPPA LYRKTALKMG LKDVPGIRIR K
 
 
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