ID   RH57_ORYSJ              Reviewed;         540 AA.
AC   Q5K5B6; A0A0P0X9L4; Q8LIE5;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-APR-2007, sequence version 2.
DT   03-AUG-2022, entry version 97.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 57;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os07g0647900, LOC_Os07g45360;
GN   ORFNames=OJ1316_A04.119, OsJ_25369, P0427D10.102;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 473-540.
RX   PubMed=12643350; DOI=10.1038/sj.cr.7290151;
RA   Lin F., Xu S.L., Ni W.M., Chu Z.Q., Xu Z.H., Xue H.W.;
RT   "Identification of ABA-responsive genes in rice shoots via cDNA macroar-.";
RL   Cell Res. 13:59-68(2003).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX52/ROK1
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK063527; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AP003822; BAC07000.1; -; Genomic_DNA.
DR   EMBL; AP004272; BAC20037.1; -; Genomic_DNA.
DR   EMBL; AP008213; BAF22387.1; -; Genomic_DNA.
DR   EMBL; AP014963; BAT02928.1; -; Genomic_DNA.
DR   EMBL; CM000144; EAZ40891.1; -; Genomic_DNA.
DR   EMBL; AK063527; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AJ437266; CAD24777.1; -; mRNA.
DR   RefSeq; XP_015647755.1; XM_015792269.1.
DR   AlphaFoldDB; Q5K5B6; -.
DR   SMR; Q5K5B6; -.
DR   STRING; 4530.OS07T0647900-01; -.
DR   iPTMnet; Q5K5B6; -.
DR   PaxDb; Q5K5B6; -.
DR   PRIDE; Q5K5B6; -.
DR   EnsemblPlants; Os07t0647900-01; Os07t0647900-01; Os07g0647900.
DR   GeneID; 4344113; -.
DR   Gramene; Os07t0647900-01; Os07t0647900-01; Os07g0647900.
DR   KEGG; osa:4344113; -.
DR   eggNOG; KOG0344; Eukaryota.
DR   HOGENOM; CLU_003041_1_4_1; -.
DR   InParanoid; Q5K5B6; -.
DR   OMA; IRAQHRI; -.
DR   OrthoDB; 400908at2759; -.
DR   Proteomes; UP000000763; Chromosome 7.
DR   Proteomes; UP000007752; Chromosome 7.
DR   Proteomes; UP000059680; Chromosome 7.
DR   Genevisible; Q5K5B6; OS.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0030490; P:maturation of SSU-rRNA; IBA:GO_Central.
DR   CDD; cd17957; DEADc_DDX52; 1.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR044764; DDX52/Rok1_DEADc.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Coiled coil; Helicase; Hydrolase; Nucleotide-binding;
KW   Reference proteome; RNA-binding.
FT   CHAIN           1..540
FT                   /note="DEAD-box ATP-dependent RNA helicase 57"
FT                   /id="PRO_0000282506"
FT   DOMAIN          177..347
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT   DOMAIN          375..519
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT   REGION          24..73
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          101..129
FT                   /evidence="ECO:0000255"
FT   MOTIF           146..174
FT                   /note="Q motif"
FT   MOTIF           294..297
FT                   /note="DEAD box"
FT   BINDING         190..197
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ   SEQUENCE   540 AA;  60110 MW;  F51DD56B207A4DB8 CRC64;
     MEKAKLSSAL FAGTHFDRKR FAGDFARFRQ GPPAPDVASA AAPSPEKKRK RQSKAKAKKS
     KKRRAEGADS ASDAVEGFSV FKGLAAKKDE DDSEKKVETG KSEDSEVVRR RKEVEREIER
     AAILRKKFDI HISGQNVPAP LENFEELVSR YGCDSYLVGN LSKLGFQEPT PIQRQAIPIL
     LSGRECFACA PTGSGKTLAF LFPILMKIKP GSKEGVKAVI LCPTRELAAQ TTRECKKLAK
     GRKFYIKLMT KDLSKSGNFK DMHCDILIST PLRLDHAVQK RDLDLSRVEY LVLDESDKLF
     ELGFVEVIDS VVKACSNPSI IRSLFSATLP DSIETLARTI MHDAVRVIVG RKNSASSLIK
     QKLIFAGTEK GKLLALRQSF AESLNPPVLI FVQSKERAKE LYKELAFDDV RADVIHADLD
     EEQRQDAVDN LRAGKTWVLI ATEVIARGMD FKGVNCVINY DFPESASAYI HRIGRSGRAG
     RSGEAITFFT EEDKPFLRNI ANVLISSGCE VPSWIKALPK LKRKKHRVNR DPISTLPDED