RH7_ORYSJ
ID RH7_ORYSJ Reviewed; 696 AA.
AC Q650T9; A0A0N7KR47;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=DEAD-box ATP-dependent RNA helicase 7;
DE EC=3.6.4.13;
GN OrderedLocusNames=Os09g0520700, LOC_Os09g34910; ORFNames=P0669G04.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC family of RNA helicases and controls ATP binding and hydrolysis.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50
CC subfamily. {ECO:0000305}.
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DR EMBL; AP006175; BAD46678.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25616.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT09010.1; -; Genomic_DNA.
DR EMBL; AK101403; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015612293.1; XM_015756807.1.
DR AlphaFoldDB; Q650T9; -.
DR SMR; Q650T9; -.
DR STRING; 4530.OS09T0520700-01; -.
DR PaxDb; Q650T9; -.
DR PRIDE; Q650T9; -.
DR EnsemblPlants; Os09t0520700-01; Os09t0520700-01; Os09g0520700.
DR GeneID; 4347610; -.
DR Gramene; Os09t0520700-01; Os09t0520700-01; Os09g0520700.
DR KEGG; osa:4347610; -.
DR eggNOG; KOG0331; Eukaryota.
DR HOGENOM; CLU_003041_20_0_1; -.
DR InParanoid; Q650T9; -.
DR OMA; KQVHTDF; -.
DR OrthoDB; 1139373at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR ExpressionAtlas; Q650T9; baseline and differential.
DR Genevisible; Q650T9; OS.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0016070; P:RNA metabolic process; IEA:EnsemblPlants.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR012562; GUCT.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08152; GUCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Coiled coil; Helicase; Hydrolase; Nucleotide-binding; Nucleus;
KW Reference proteome; RNA-binding.
FT CHAIN 1..696
FT /note="DEAD-box ATP-dependent RNA helicase 7"
FT /id="PRO_0000282474"
FT DOMAIN 146..328
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 357..500
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT REGION 1..116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 641..696
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 16..97
FT /evidence="ECO:0000255"
FT MOTIF 115..143
FT /note="Q motif"
FT MOTIF 274..277
FT /note="DEAD box"
FT COMPBIAS 16..40
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 64..91
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..107
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 159..166
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT CONFLICT 246
FT /note="I -> S (in Ref. 4; AK101403)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 696 AA; 75026 MW; 0E17D2131384D46B CRC64;
MPSLPVAAAE PMAVDESASK KSKRKLKAAE VEVEASSRKK EKKEKKRKAK EPSPSSSSSS
EEEERSSTSS DEPAPAAKKA KKEKTKEKVV VEEEEEDDDE GELTASGDED PADPNALANF
RISESLREKL KSKGIKALFP IQATTFDLVL DGHDLVGRAR TGQGKTLAFV LPILESLVNG
THKASRRTDY GRPPTVLVLL PTRELAKQVH TDFAFYGATF GLSACCVYGG SDYRSQEMAI
RKGVDIVVGT PGRVKDFVEK GTLNFRSLKF RVLDEADEML NMGFVDDVEL ILGKVEDVTK
VQTLLFSATI PEWVKKLSLR FLKSGKKTVD LVGDEKLKAS ASVRHLALPC NRAARAQVIP
DIIRCYSRGG RTIIFTETKE SASDLSGLIA GSRALHGDVA QAQREVILAG FRSGKFLVLV
ATNVAARGLD INDVQLIIQC EPPRDVEAYI HRSGRTGRAG NTGVAVMLFE PRYKFNVNRI
ERESGVKFEH ISAPQPTDVA QSAGTEAAEA ISSVSDSVIP VFREQAEQLL NSSGMSAVDL
LAKALAKAVG YTDIKKRSLL SSMDNHTTLL LQTGRSVYAA GFVLSTLKRF MPEERLADVK
GITITADGTG AVFDVPSAEV EDYIQGAQNA AMVTVEEVKQ LPPLQEREQS GGSRGGGRFG
NRRFSGGGGG RGGGGRGFGG GRGRGGGGGN RFNKRY
