RH9_ORYSJ
ID RH9_ORYSJ Reviewed; 628 AA.
AC Q0ILZ4; A0A0P0YBZ7;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=DEAD-box ATP-dependent RNA helicase 9;
DE EC=3.6.4.13;
GN OrderedLocusNames=Os12g0611200, LOC_Os12g41715;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC family of RNA helicases and controls ATP binding and hydrolysis.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF30271.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP008218; BAF30271.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014968; BAT18038.1; -; Genomic_DNA.
DR EMBL; AK287833; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015620393.1; XM_015764907.1.
DR AlphaFoldDB; Q0ILZ4; -.
DR SMR; Q0ILZ4; -.
DR STRING; 4530.OS12T0611200-01; -.
DR PaxDb; Q0ILZ4; -.
DR PRIDE; Q0ILZ4; -.
DR EnsemblPlants; Os12t0611200-01; Os12t0611200-01; Os12g0611200.
DR GeneID; 4352769; -.
DR Gramene; Os12t0611200-01; Os12t0611200-01; Os12g0611200.
DR KEGG; osa:4352769; -.
DR eggNOG; KOG0331; Eukaryota.
DR HOGENOM; CLU_003041_29_2_1; -.
DR InParanoid; Q0ILZ4; -.
DR OMA; KHQPGRF; -.
DR OrthoDB; 1139373at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q0ILZ4; OS.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0000373; P:Group II intron splicing; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome;
KW RNA-binding.
FT CHAIN 1..628
FT /note="DEAD-box ATP-dependent RNA helicase 9"
FT /id="PRO_0000282475"
FT DOMAIN 129..302
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 331..478
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT REGION 496..548
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 571..628
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 98..126
FT /note="Q motif"
FT MOTIF 250..253
FT /note="DEAD box"
FT COMPBIAS 601..628
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 142..149
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 628 AA; 65595 MW; EFBFE0AC2784EF9A CRC64;
MYSILRRAAP LRRRAVSALA AAVLRREEAA AEVVVSRRAT IPAAWFHSSP AWLGFRETGA
AGAAARPQYA ADEGLFYEED KRGAKAGGVA AGGAEEGLEV AKLGISPKIV SQLASRGITK
LFPIQRAVLE PAMQGKDMVG RAKTGTGKTL AFGIPILDAI IRHNEKNSPG KFPLAIVLAP
TRELAKQVER EFSDSSNVET ICVYGGTPIS QQIRQLNYGV DVVIGTPGRV IDLLKRGALN
LSEVRFVVLD EADQMLSVGF DEDVETILDR VPPKRQTLMF SATMPTWIQR LTQKYLKNPV
TIDLVGEDDQ KLAEGISLYS IASEGHAKPA VLGELIKEHA KGGKCIVFTQ TKRDADRLSY
TMGRSFQCQA LHGDITQAQR ERTLKGFREG HFNILIATDV AARGLDIPNV DLVIHFELPN
SSELFVHRSG RTGRAGKKGK AIVMHSYQQS RAIRMVENDV GCKFTELPKI NVEGSDLMSG
GFDSFGGGGF GREGGGSYGR RGSFGSSSSR GGGFGDSGFG RSGGGFGRSG GGGFGRSSGG
GFGDSGFGRS GGGGFGDSGF GRSGGGGYGD SGFGSSGGGS GRSGFGRSGG FGDSGSGRFG
GGFGNSGSGS FGNFGGNNSG QSGGFGSS
