RHD31_ORYSJ
ID RHD31_ORYSJ Reviewed; 854 AA.
AC Q2QMH2; A0A0P0YC71;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Protein ROOT HAIR DEFECTIVE 3 homolog 1 {ECO:0000255|HAMAP-Rule:MF_03109};
DE EC=3.6.5.- {ECO:0000255|HAMAP-Rule:MF_03109};
DE AltName: Full=Protein SEY1 homolog 2 {ECO:0000255|HAMAP-Rule:MF_03109};
GN OrderedLocusNames=Os12g0604600, LOC_Os12g41170;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Probable GTP-binding protein that may be involved in cell
CC development. {ECO:0000255|HAMAP-Rule:MF_03109}.
CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC {ECO:0000255|HAMAP-Rule:MF_03109}; Multi-pass membrane protein
CC {ECO:0000255|HAMAP-Rule:MF_03109}.
CC -!- SIMILARITY: Belongs to the TRAFAC class dynamin-like GTPase
CC superfamily. GB1/RHD3 GTPase family. RHD3 subfamily.
CC {ECO:0000255|PROSITE-ProRule:PRU01052}.
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DR EMBL; DP000011; ABA99822.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF30237.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT17974.1; -; Genomic_DNA.
DR EMBL; AK070939; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015618224.1; XM_015762738.1.
DR AlphaFoldDB; Q2QMH2; -.
DR SMR; Q2QMH2; -.
DR STRING; 4530.OS12T0604600-01; -.
DR PaxDb; Q2QMH2; -.
DR PRIDE; Q2QMH2; -.
DR EnsemblPlants; Os12t0604600-01; Os12t0604600-01; Os12g0604600.
DR GeneID; 4352733; -.
DR Gramene; Os12t0604600-01; Os12t0604600-01; Os12g0604600.
DR KEGG; osa:4352733; -.
DR eggNOG; KOG2203; Eukaryota.
DR HOGENOM; CLU_011270_1_0_1; -.
DR InParanoid; Q2QMH2; -.
DR OMA; DIMEDIM; -.
DR OrthoDB; 418635at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QMH2; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003924; F:GTPase activity; IBA:GO_Central.
DR GO; GO:0016320; P:endoplasmic reticulum membrane fusion; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_03109; Sey1; 1.
DR InterPro; IPR030386; G_GB1_RHD3_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR008803; RHD3/Sey1.
DR PANTHER; PTHR45923; PTHR45923; 1.
DR Pfam; PF05879; RHD3; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS51715; G_GB1_RHD3; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Endoplasmic reticulum; GTP-binding; Hydrolase; Membrane;
KW Nucleotide-binding; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..854
FT /note="Protein ROOT HAIR DEFECTIVE 3 homolog 1"
FT /id="PRO_0000407758"
FT TOPO_DOM 1..680
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TRANSMEM 681..701
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TOPO_DOM 702..704
FT /note="Lumenal"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TRANSMEM 705..725
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TOPO_DOM 726..854
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT DOMAIN 37..252
FT /note="GB1/RHD3-type G"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01052"
FT REGION 758..854
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 217..242
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT COMPBIAS 758..778
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 813..833
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 47..54
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT CONFLICT 741
FT /note="V -> I (in Ref. 5; AK070939)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 854 AA; 95133 MW; D71E968A8253E4A6 CRC64;
MDEAAAAEAV QLIDGEGEFA ADSAERFMAA AGVAGCGLSY AVVSIMGPQS SGKSTLLNQL
FGTNFREMDA FRGRSQTTKG IWIARCVGVE PCTVVMDLEG TDGRERGEDD TAFEKQSSLF
ALAISDIVLI NMWCHDIGRE QAANKPLLKT VFQVMMRLFS PRKTTLLFVI RDKTRTPLEH
LEPVLREDIQ KIWNSVAKPE AHKDTPISEF FNVQVTALPS FEEKEEQFRE QVQQLRQRFS
NSIAPGGLAG DRRGVVPASG FLFSSQQIWK VIRENKDLDL PAHKVMVATV RCDEIAHEKF
SCLTSDAEWM ELESDVQSGP VPGFGKKLGY IVDVHMQEYD KEAIYFDEAV RTAKRQLLKS
RVLNLVQPAF QKMLAHLRTR ALEKYKTELN LTLESGKGFA AAVRDTTESN LNEFDQGCAD
AVIEQADWDY SKILEKVRRD VEDHTLSIRE GKLSELTNHA KEKLRKALVE PVESLFDAAG
PSTWASIRNL FKRETEAILP EFQKNLAGFE MESATSEGMV SKLRDYARSI VENKAKEEAG
KVLIHMKERF TTVFSHDKDS IPRVWTGKED VRAIAKDARS AALKLLSVLA AIRWDEKPDK
IEKILTSTLL DGSVTPKSKG ASASSDPLAS TTWEEVSPKY TLITPSQCKS LWKQFKAETE
FAITQAVSTQ QAHKRGNGRL PPPWAMVAIA VLGFNEIMTL LRNPIYLFLL FVGYLLVKAL
AVQLDINREF QNGVVPGIIS VTAKLIPTLQ NILNKVATEQ QQQQGHHQDA AAEAPQQQQQ
PQPQPPPLLL SPRSPMSELR RPLHMPFSPV RKAVSPSPSS SSSTVTSPRN AGEDQKPRQM
VQPDNESNNA YSIV
