RHD3_ORYSJ
ID RHD3_ORYSJ Reviewed; 806 AA.
AC Q0JLS6; A0A0P0V4F3; Q656P7;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Protein ROOT HAIR DEFECTIVE 3 {ECO:0000255|HAMAP-Rule:MF_03109};
DE EC=3.6.5.- {ECO:0000255|HAMAP-Rule:MF_03109};
DE AltName: Full=Protein SEY1 homolog 1 {ECO:0000255|HAMAP-Rule:MF_03109};
GN Name=RHD3; OrderedLocusNames=Os01g0575000, LOC_Os01g39310;
GN ORFNames=B1112D09.4;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Probable GTP-binding protein that may be involved in cell
CC development. {ECO:0000255|HAMAP-Rule:MF_03109}.
CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC {ECO:0000255|HAMAP-Rule:MF_03109}; Multi-pass membrane protein
CC {ECO:0000255|HAMAP-Rule:MF_03109}.
CC -!- SIMILARITY: Belongs to the TRAFAC class dynamin-like GTPase
CC superfamily. GB1/RHD3 GTPase family. RHD3 subfamily.
CC {ECO:0000255|PROSITE-ProRule:PRU01052}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK101859; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAD45217.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003432; BAD45217.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF05302.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS72819.1; -; Genomic_DNA.
DR EMBL; AK101859; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015617808.1; XM_015762322.1.
DR AlphaFoldDB; Q0JLS6; -.
DR SMR; Q0JLS6; -.
DR STRING; 4530.OS01T0575000-01; -.
DR PaxDb; Q0JLS6; -.
DR PRIDE; Q0JLS6; -.
DR EnsemblPlants; Os01t0575000-01; Os01t0575000-01; Os01g0575000.
DR EnsemblPlants; Os01t0575000-02; Os01t0575000-02; Os01g0575000.
DR GeneID; 4326314; -.
DR Gramene; Os01t0575000-01; Os01t0575000-01; Os01g0575000.
DR Gramene; Os01t0575000-02; Os01t0575000-02; Os01g0575000.
DR KEGG; osa:4326314; -.
DR eggNOG; KOG2203; Eukaryota.
DR HOGENOM; CLU_011270_1_0_1; -.
DR InParanoid; Q0JLS6; -.
DR OMA; ICNDKSE; -.
DR OrthoDB; 418635at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q0JLS6; baseline and differential.
DR Genevisible; Q0JLS6; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003924; F:GTPase activity; IBA:GO_Central.
DR GO; GO:0016320; P:endoplasmic reticulum membrane fusion; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_03109; Sey1; 1.
DR InterPro; IPR030386; G_GB1_RHD3_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR008803; RHD3/Sey1.
DR PANTHER; PTHR45923; PTHR45923; 1.
DR Pfam; PF05879; RHD3; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS51715; G_GB1_RHD3; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Endoplasmic reticulum; GTP-binding; Hydrolase; Membrane;
KW Nucleotide-binding; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..806
FT /note="Protein ROOT HAIR DEFECTIVE 3"
FT /id="PRO_0000407757"
FT TOPO_DOM 1..676
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TRANSMEM 677..697
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TOPO_DOM 698..700
FT /note="Lumenal"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TRANSMEM 701..721
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT TOPO_DOM 722..806
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT DOMAIN 34..249
FT /note="GB1/RHD3-type G"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01052"
FT REGION 756..806
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 214..239
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT COILED 446..466
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
FT COMPBIAS 756..773
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 774..800
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 44..51
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03109"
SQ SEQUENCE 806 AA; 90478 MW; 86A49B0189AAB256 CRC64;
MDACFSTQLI DGDGVFNVSG LENFMKEVKM GECGLSYAVV SIMGPQSSGK STLLNHLFRT
NFREMDAFKG RSQTTKGIWM AKAHNIEPCT LVMDLEGTDG RERGEDDTAF EKQSALFALA
VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTLLFVIRDK SKTPLENLEP
ILREDIQKIW DGVPKPHAHK ETPLSEFFNV EVVALSSYEE KEELFKEQVA SLRDRFQQSI
APGGLAGDRR GVVPASGFSF SSQQFWKVIK ENKDLDLPAH KVMVATVRCE EIGNEKIASF
TADEEWQQFE EAVQHDYVPG FGKKISNLLD RCLSEYDMEA IYFDEGVRTS KRHQLESKLL
QLVNPAYQNI LDHLRTRTLE VFKESFDKSL EKEGFAVAAR DCTKVFLEKF DKGSEDAAIQ
QVKWDPSKIK DKLKRDIEAH VASVRAKKLS ELCSKYEGQL TKALAEPVEA LLDSASEETW
PAIRKLLQRE TKSAVSGFES AMASFELDEV TQKELLSKLE SHGKSVVESK AKEEAARVLI
RMKDRFSTLF SRDADSMPRV WTGKEDIKAI TKTARSASMK LLSTMAAIRL DEDGDNIENT
LSLALVDTAR PGTTDRSIQS FDPLASSSWE RVPEEKTLIT PVQCKSLWRQ FKAETEYTVT
QAIAAQEANK RNNNWLPPPW ALAAMAILGF NEFMTLLKNP LYLGVIFVVF LVGKAMWVQL
DIAKEFQNGF LPAVLSLSTK FVPTIMNILK RLADEGQRPA APERQREMEL QPKSTRNGSH
SNVTSAGSSS ITSSESGPEY SSPIAH
