RIBF_ORYSJ
ID RIBF_ORYSJ Reviewed; 391 AA.
AC Q10BX9; A0A0P0W4U7; Q84SZ9;
DT 14-MAY-2014, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 25-MAY-2022, entry version 98.
DE RecName: Full=FAD synthetase, chloroplastic;
DE EC=2.7.7.2;
DE AltName: Full=FAD pyrophosphorylase;
DE AltName: Full=FMN adenylyltransferase;
DE AltName: Full=Flavin adenine dinucleotide synthase;
DE Flags: Precursor;
GN Name=RIBF; OrderedLocusNames=Os03g0801700, LOC_Os03g58710;
GN ORFNames=OsJ_12987;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Catalyzes the adenylation of flavin mononucleotide (FMN) to
CC form flavin adenine dinucleotide (FAD) coenzyme. {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + FMN + H(+) = diphosphate + FAD; Xref=Rhea:RHEA:17237,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019,
CC ChEBI:CHEBI:57692, ChEBI:CHEBI:58210; EC=2.7.7.2;
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250};
CC -!- PATHWAY: Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step
CC 1/1.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAO72379.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC108906; AAO72379.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF99394.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13508.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86896.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE60113.1; -; Genomic_DNA.
DR RefSeq; XP_015628716.1; XM_015773230.1.
DR AlphaFoldDB; Q10BX9; -.
DR STRING; 4530.OS03T0801700-01; -.
DR PaxDb; Q10BX9; -.
DR PRIDE; Q10BX9; -.
DR EnsemblPlants; Os03t0801700-01; Os03t0801700-01; Os03g0801700.
DR GeneID; 4334460; -.
DR Gramene; Os03t0801700-01; Os03t0801700-01; Os03g0801700.
DR KEGG; osa:4334460; -.
DR eggNOG; ENOG502QVVU; Eukaryota.
DR HOGENOM; CLU_057424_0_0_1; -.
DR InParanoid; Q10BX9; -.
DR OMA; IMLPKSC; -.
DR OrthoDB; 882279at2759; -.
DR PlantReactome; R-OSA-1119379; Flavin biosynthesis.
DR UniPathway; UPA00277; UER00407.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10BX9; OS.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003919; F:FMN adenylyltransferase activity; IBA:GO_Central.
DR GO; GO:0006747; P:FAD biosynthetic process; IBA:GO_Central.
DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro.
DR Gene3D; 3.40.50.620; -; 1.
DR InterPro; IPR015864; FAD_synthase.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR Pfam; PF06574; FAD_syn; 1.
PE 3: Inferred from homology;
KW ATP-binding; Chloroplast; FAD; Flavoprotein; FMN; Nucleotide-binding;
KW Nucleotidyltransferase; Plastid; Reference proteome; Transferase;
KW Transit peptide.
FT TRANSIT 1..53
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 54..391
FT /note="FAD synthetase, chloroplastic"
FT /id="PRO_0000429028"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 391 AA; 43337 MW; 839C1954C3FD307A CRC64;
MERGAAAAGA LSCTFRSPSP SPTSPAAPHW RPLLGFRSRS RSRGRGWGQR AVVAGAPRLF
LPPPCRRFRY CSQSKLLGTN KGQNRCSLAT FSSFGQSGIS LNNEDLVKDK LLIDCGEDQD
CVIDGIVALG KFDALHIGHR ELAMYASKAG TPFLLSFVGI AEVLGWEYRP PIVAQCDRKR
VLTSWAPYCK NVVPIEYQVE FSKVRYLTPR QFVERLSRDL KIQGVVAGEN YRFGYRASGD
AAELVKLCEE FGLSAFIVRS VMDTARSYNG VTTSVNSSDK GQVSSSRVRH ALAMGDMEYV
SELLGRKHRL VLTVKENHLQ ERKRIMLPKS CMLNMPPADG LYENCDLLNG GHLGLCRVII
NSETIVIEMK DENSLLPNTI QENQQLGIEF G
