RIMM_PSEAE
ID RIMM_PSEAE Reviewed; 175 AA.
AC Q9HXQ0;
DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014};
GN Name=rimM {ECO:0000255|HAMAP-Rule:MF_00014}; OrderedLocusNames=PA3744;
OS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
OS 14847 / LMG 12228 / 1C / PRS 101 / PAO1).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=208964;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
RC PRS 101 / PAO1;
RX PubMed=10984043; DOI=10.1038/35023079;
RA Stover C.K., Pham X.-Q.T., Erwin A.L., Mizoguchi S.D., Warrener P.,
RA Hickey M.J., Brinkman F.S.L., Hufnagle W.O., Kowalik D.J., Lagrou M.,
RA Garber R.L., Goltry L., Tolentino E., Westbrock-Wadman S., Yuan Y.,
RA Brody L.L., Coulter S.N., Folger K.R., Kas A., Larbig K., Lim R.M.,
RA Smith K.A., Spencer D.H., Wong G.K.-S., Wu Z., Paulsen I.T., Reizer J.,
RA Saier M.H. Jr., Hancock R.E.W., Lory S., Olson M.V.;
RT "Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic
RT pathogen.";
RL Nature 406:959-964(2000).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (2.46 ANGSTROMS).
RG Joint center for structural genomics (JCSG);
RT "Crystal structure of 16s rRNA processing protein from Pseudomonas
RT aeruginosa at 2.46 A resolution.";
RL Submitted (FEB-2006) to the PDB data bank.
CC -!- FUNCTION: An accessory protein needed during the final step in the
CC assembly of 30S ribosomal subunit, possibly for assembly of the head
CC region. Probably interacts with S19. Essential for efficient processing
CC of 16S rRNA. May be needed both before and after RbfA during the
CC maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits
CC but not for 70S ribosomes. {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- SUBUNIT: Binds ribosomal protein S19. {ECO:0000255|HAMAP-
CC Rule:MF_00014}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- DOMAIN: The PRC barrel domain binds ribosomal protein S19.
CC {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- SIMILARITY: Belongs to the RimM family. {ECO:0000255|HAMAP-
CC Rule:MF_00014}.
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DR EMBL; AE004091; AAG07131.1; -; Genomic_DNA.
DR PIR; D83178; D83178.
DR RefSeq; NP_252433.1; NC_002516.2.
DR RefSeq; WP_003113830.1; NZ_QZGE01000001.1.
DR PDB; 2F1L; X-ray; 2.46 A; A=1-175.
DR PDBsum; 2F1L; -.
DR AlphaFoldDB; Q9HXQ0; -.
DR SMR; Q9HXQ0; -.
DR STRING; 287.DR97_4132; -.
DR PaxDb; Q9HXQ0; -.
DR PRIDE; Q9HXQ0; -.
DR DNASU; 880358; -.
DR EnsemblBacteria; AAG07131; AAG07131; PA3744.
DR GeneID; 880358; -.
DR KEGG; pae:PA3744; -.
DR PATRIC; fig|208964.12.peg.3916; -.
DR PseudoCAP; PA3744; -.
DR HOGENOM; CLU_077636_1_0_6; -.
DR InParanoid; Q9HXQ0; -.
DR OMA; DEFYHAD; -.
DR PhylomeDB; Q9HXQ0; -.
DR BioCyc; PAER208964:G1FZ6-3815-MON; -.
DR EvolutionaryTrace; Q9HXQ0; -.
DR Proteomes; UP000002438; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005840; C:ribosome; IEA:InterPro.
DR GO; GO:0043022; F:ribosome binding; IEA:InterPro.
DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-UniRule.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR Gene3D; 2.40.30.60; -; 1.
DR HAMAP; MF_00014; Ribosome_mat_RimM; 1.
DR InterPro; IPR011961; 16S_RimM.
DR InterPro; IPR027275; PRC-brl_dom.
DR InterPro; IPR011033; PRC_barrel-like_sf.
DR InterPro; IPR002676; RimM_N.
DR InterPro; IPR036976; RimM_N_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR Pfam; PF05239; PRC; 1.
DR Pfam; PF01782; RimM; 1.
DR SUPFAM; SSF50346; SSF50346; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR TIGRFAMs; TIGR02273; 16S_RimM; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chaperone; Cytoplasm; Reference proteome;
KW Ribosome biogenesis.
FT CHAIN 1..175
FT /note="Ribosome maturation factor RimM"
FT /id="PRO_0000163335"
FT DOMAIN 98..175
FT /note="PRC barrel"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00014"
FT STRAND 8..18
FT /evidence="ECO:0007829|PDB:2F1L"
FT TURN 19..22
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 23..28
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 30..32
FT /evidence="ECO:0007829|PDB:2F1L"
FT HELIX 33..38
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 41..46
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 49..61
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 64..69
FT /evidence="ECO:0007829|PDB:2F1L"
FT HELIX 75..79
FT /evidence="ECO:0007829|PDB:2F1L"
FT TURN 80..83
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 85..89
FT /evidence="ECO:0007829|PDB:2F1L"
FT HELIX 90..92
FT /evidence="ECO:0007829|PDB:2F1L"
FT HELIX 103..106
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 110..113
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 118..126
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 129..131
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 133..137
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 142..145
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 148..151
FT /evidence="ECO:0007829|PDB:2F1L"
FT TURN 154..156
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 157..161
FT /evidence="ECO:0007829|PDB:2F1L"
FT TURN 162..165
FT /evidence="ECO:0007829|PDB:2F1L"
FT STRAND 166..169
FT /evidence="ECO:0007829|PDB:2F1L"
SQ SEQUENCE 175 AA; 19790 MW; AC5B599D9282D414 CRC64;
MPTPADDLVV IGKIVSVYGI RGEVKVYSFT DPLDNLLDYR RWTLRRDGEI RQAELVRGRL
HGKVLAAKLK GLDDREEART FTGYEICIPR SELPSLEEGE YYWHQLEGLK VIDQGRQLLG
VIDHLLETGA NDVMVVKPCA GSLDDRERLL PYTGQCVLSI DLAAGEMRVD WDADF
