RIPX_MAIZE
ID RIPX_MAIZE Reviewed; 301 AA.
AC P28522;
DT 01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-1992, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Ribosome-inactivating protein;
DE EC=3.2.2.22;
DE AltName: Full=rRNA N-glycosidase;
DE Contains:
DE RecName: Full=Ribosome-inactivating protein alpha chain;
DE Contains:
DE RecName: Full=Ribosome-inactivating protein beta chain;
DE Flags: Precursor;
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND PROTEIN SEQUENCE OF 13-49; 155-161 AND
RP 187-215.
RX PubMed=1744135; DOI=10.1016/s0021-9258(18)54513-0;
RA Walsh T.A., Morgan A.E., Hey T.D.;
RT "Characterization and molecular cloning of a proenzyme form of a ribosome-
RT inactivating protein from maize. Novel mechanism of proenzyme activation by
RT proteolytic removal of a 2.8-kilodalton internal peptide segment.";
RL J. Biol. Chem. 266:23422-23427(1991).
CC -!- FUNCTION: Potent catalytic inactivator of eukaryotic protein synthesis.
CC It may be a component of natural defense mechanisms involved in
CC protecting the kernel against soil-borne fungal infections.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Endohydrolysis of the N-glycosidic bond at one specific
CC adenosine on the 28S rRNA.; EC=3.2.2.22;
CC -!- SUBUNIT: Synthesized and stored in the kernel as a 34 kDa inactive
CC precursor. During germination, this neutral precursor is converted into
CC a basic, active form by limited proteolysis, which removes 25 AA of net
CC charge -6 from the center of the polypeptide chain. Additional
CC processing also occurs at the N- and C-termini of the polypeptide. A
CC two-chain active RIP (comprised of 16.5 and 8.5 kDa fragments that
CC remain tightly associated) is produced from this processing event.
CC -!- SIMILARITY: Belongs to the ribosome-inactivating protein family. Type 1
CC RIP subfamily. {ECO:0000305}.
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DR EMBL; M77122; AAA33508.1; -; mRNA.
DR PIR; A41590; RLZMRI.
DR PDB; 2K6H; NMR; -; A=17-162, A=190-288.
DR PDB; 2PQI; X-ray; 2.50 A; A/B/C=22-162, A/B/C=190-288.
DR PDB; 2PQJ; X-ray; 2.80 A; A/B/C=22-162, A/B/C=190-288.
DR PDBsum; 2K6H; -.
DR PDBsum; 2PQI; -.
DR PDBsum; 2PQJ; -.
DR AlphaFoldDB; P28522; -.
DR SMR; P28522; -.
DR PaxDb; P28522; -.
DR PRIDE; P28522; -.
DR MaizeGDB; 30000; -.
DR eggNOG; ENOG502S89M; Eukaryota.
DR EvolutionaryTrace; P28522; -.
DR Proteomes; UP000007305; Unplaced.
DR ExpressionAtlas; P28522; baseline and differential.
DR GO; GO:0030598; F:rRNA N-glycosylase activity; IEA:UniProtKB-EC.
DR GO; GO:0090729; F:toxin activity; IEA:UniProtKB-KW.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0017148; P:negative regulation of translation; IEA:UniProtKB-KW.
DR Gene3D; 3.40.420.10; -; 1.
DR Gene3D; 4.10.470.10; -; 1.
DR InterPro; IPR036041; Ribosome-inact_prot_sf.
DR InterPro; IPR017989; Ribosome_inactivat_1/2.
DR InterPro; IPR001574; Ribosome_inactivat_prot.
DR InterPro; IPR017988; Ribosome_inactivat_prot_CS.
DR InterPro; IPR016138; Ribosome_inactivat_prot_sub1.
DR InterPro; IPR016139; Ribosome_inactivat_prot_sub2.
DR PANTHER; PTHR33453; PTHR33453; 1.
DR Pfam; PF00161; RIP; 1.
DR PRINTS; PR00396; SHIGARICIN.
DR SUPFAM; SSF56371; SSF56371; 1.
DR PROSITE; PS00275; SHIGA_RICIN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cleavage on pair of basic residues;
KW Direct protein sequencing; Hydrolase; Plant defense;
KW Protein synthesis inhibitor; Reference proteome; Toxin; Zymogen.
FT PROPEP 1..16
FT /note="Or 12 (in 10% of the molecules)"
FT /id="PRO_0000030758"
FT CHAIN 17..161
FT /note="Ribosome-inactivating protein alpha chain"
FT /id="PRO_0000030759"
FT PROPEP 162..186
FT /evidence="ECO:0000269|PubMed:1744135"
FT /id="PRO_0000030760"
FT CHAIN 187..?257
FT /note="Ribosome-inactivating protein beta chain"
FT /id="PRO_0000030761"
FT PROPEP ?258..301
FT /id="PRO_0000030762"
FT ACT_SITE 207
FT /evidence="ECO:0000250"
FT STRAND 27..30
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 36..48
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 51..54
FT /evidence="ECO:0007829|PDB:2K6H"
FT STRAND 57..61
FT /evidence="ECO:0007829|PDB:2K6H"
FT STRAND 72..78
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 83..89
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 90..92
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 94..99
FT /evidence="ECO:0007829|PDB:2PQI"
FT TURN 101..103
FT /evidence="ECO:0007829|PDB:2K6H"
FT STRAND 105..109
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 115..117
FT /evidence="ECO:0007829|PDB:2K6H"
FT HELIX 130..134
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 135..137
FT /evidence="ECO:0007829|PDB:2K6H"
FT HELIX 139..141
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 142..145
FT /evidence="ECO:0007829|PDB:2K6H"
FT HELIX 146..157
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 194..204
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 206..210
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 212..220
FT /evidence="ECO:0007829|PDB:2PQI"
FT TURN 221..223
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 224..226
FT /evidence="ECO:0007829|PDB:2K6H"
FT HELIX 232..238
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 241..253
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 260..263
FT /evidence="ECO:0007829|PDB:2PQI"
FT TURN 264..266
FT /evidence="ECO:0007829|PDB:2PQI"
FT HELIX 270..276
FT /evidence="ECO:0007829|PDB:2PQI"
FT STRAND 277..280
FT /evidence="ECO:0007829|PDB:2PQI"
SQ SEQUENCE 301 AA; 33330 MW; C73F599A2121D360 CRC64;
MAEITLEPSD LMAQTNKRIV PKFTEIFPVE DANYPYSAFI ASVRKDVIKH CTDHKGIFQP
VLPPEKKVPE LWFYTELKTR TSSITLAIRM DNLYLVGFRT PGGVWWEFGK DGDTHLLGDN
PRWLGFGGRY QDLIGNKGLE TVTMGRAEMT RAVNDLAKKK KMATLEEEEV KMQMQMPEAA
DLAAAAAADP QADTKSKLVK LVVMVCEGLR FNTVSRTVDA GFNSQHGVTL TVTQGKQVQK
WDRISKAAFE WADHPTAVIP DMQKLGIKDK NEAARIVALV KNQTTAAAAT AASADNDDDE
A