RISC_METJA
ID RISC_METJA Reviewed; 156 AA.
AC Q58584;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Riboflavin synthase;
DE EC=2.5.1.9;
GN Name=ribC; OrderedLocusNames=MJ1184;
OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
OS 10045 / NBRC 100440) (Methanococcus jannaschii).
OC Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales;
OC Methanocaldococcaceae; Methanocaldococcus.
OX NCBI_TaxID=243232;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440;
RX PubMed=8688087; DOI=10.1126/science.273.5278.1058;
RA Bult C.J., White O., Olsen G.J., Zhou L., Fleischmann R.D., Sutton G.G.,
RA Blake J.A., FitzGerald L.M., Clayton R.A., Gocayne J.D., Kerlavage A.R.,
RA Dougherty B.A., Tomb J.-F., Adams M.D., Reich C.I., Overbeek R.,
RA Kirkness E.F., Weinstock K.G., Merrick J.M., Glodek A., Scott J.L.,
RA Geoghagen N.S.M., Weidman J.F., Fuhrmann J.L., Nguyen D., Utterback T.R.,
RA Kelley J.M., Peterson J.D., Sadow P.W., Hanna M.C., Cotton M.D.,
RA Roberts K.M., Hurst M.A., Kaine B.P., Borodovsky M., Klenk H.-P.,
RA Fraser C.M., Smith H.O., Woese C.R., Venter J.C.;
RT "Complete genome sequence of the methanogenic archaeon, Methanococcus
RT jannaschii.";
RL Science 273:1058-1073(1996).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=2 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) = 5-amino-6-(D-
CC ribitylamino)uracil + riboflavin; Xref=Rhea:RHEA:20772,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:15934, ChEBI:CHEBI:57986,
CC ChEBI:CHEBI:58201; EC=2.5.1.9;
CC -!- PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; riboflavin
CC from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-
CC ribitylamino)uracil: step 2/2.
CC -!- SIMILARITY: Belongs to the DMRL synthase family. {ECO:0000305}.
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DR EMBL; L77117; AAB99185.1; -; Genomic_DNA.
DR PIR; G64447; G64447.
DR RefSeq; WP_010870697.1; NC_000909.1.
DR PDB; 2B98; X-ray; 2.30 A; A/B/C/D/E=1-156.
DR PDB; 2B99; X-ray; 2.22 A; A/B/C/D/E=1-156.
DR PDB; 4Y7J; X-ray; 4.10 A; A/B/C/D/E=1-156.
DR PDB; 4Y7K; X-ray; 3.50 A; A/B/C/D/E=2-156.
DR PDB; 5IM5; X-ray; 3.70 A; A/B/C/D/E/F/G/H/I/J/K/M/O/Q/S=1-156.
DR PDBsum; 2B98; -.
DR PDBsum; 2B99; -.
DR PDBsum; 4Y7J; -.
DR PDBsum; 4Y7K; -.
DR PDBsum; 5IM5; -.
DR AlphaFoldDB; Q58584; -.
DR SMR; Q58584; -.
DR STRING; 243232.MJ_1184; -.
DR EnsemblBacteria; AAB99185; AAB99185; MJ_1184.
DR GeneID; 1452082; -.
DR KEGG; mja:MJ_1184; -.
DR eggNOG; arCOG01322; Archaea.
DR HOGENOM; CLU_1682776_0_0_2; -.
DR InParanoid; Q58584; -.
DR OMA; QLMTNTH; -.
DR OrthoDB; 104564at2157; -.
DR PhylomeDB; Q58584; -.
DR BioCyc; MetaCyc:MON-14602; -.
DR BRENDA; 2.5.1.9; 3260.
DR UniPathway; UPA00275; UER00405.
DR EvolutionaryTrace; Q58584; -.
DR Proteomes; UP000000805; Chromosome.
DR GO; GO:0009349; C:riboflavin synthase complex; IEA:InterPro.
DR GO; GO:0004746; F:riboflavin synthase activity; IEA:UniProtKB-EC.
DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd09210; Riboflavin_synthase_archaeal; 1.
DR Gene3D; 3.40.50.960; -; 1.
DR InterPro; IPR002180; LS/RS.
DR InterPro; IPR036467; LS/RS_sf.
DR InterPro; IPR006399; Ribfl_synth_arc.
DR Pfam; PF00885; DMRL_synthase; 1.
DR PIRSF; PIRSF015750; Ribfl_synth_arc; 1.
DR SUPFAM; SSF52121; SSF52121; 1.
DR TIGRFAMs; TIGR01506; ribC_arch; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Riboflavin biosynthesis; Transferase.
FT CHAIN 1..156
FT /note="Riboflavin synthase"
FT /id="PRO_0000134860"
FT STRAND 4..12
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 18..28
FT /evidence="ECO:0007829|PDB:2B99"
FT STRAND 33..41
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 42..44
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 45..55
FT /evidence="ECO:0007829|PDB:2B99"
FT STRAND 59..65
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 71..91
FT /evidence="ECO:0007829|PDB:2B99"
FT STRAND 95..99
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 102..104
FT /evidence="ECO:0007829|PDB:2B99"
FT STRAND 105..107
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 108..131
FT /evidence="ECO:0007829|PDB:2B99"
FT HELIX 133..138
FT /evidence="ECO:0007829|PDB:2B99"
FT TURN 139..141
FT /evidence="ECO:0007829|PDB:2B99"
FT STRAND 146..148
FT /evidence="ECO:0007829|PDB:2B98"
SQ SEQUENCE 156 AA; 17495 MW; 6D65112C6B1320F5 CRC64;
MTKKVGIVDT TFARVDMASI AIKKLKELSP NIKIIRKTVP GIKDLPVACK KLLEEEGCDI
VMALGMPGKA EKDKVCAHEA SLGLMLAQLM TNKHIIEVFV HEDEAKDDKE LDWLAKRRAE
EHAENVYYLL FKPEYLTRMA GKGLRQGFED AGPARE