RK123_ARATH
ID RK123_ARATH Reviewed; 187 AA.
AC P36212; Q9LK92;
DT 01-JUN-1994, integrated into UniProtKB/Swiss-Prot.
DT 06-JUN-2002, sequence version 2.
DT 03-AUG-2022, entry version 153.
DE RecName: Full=50S ribosomal protein L12-3, chloroplastic;
DE AltName: Full=CL12-C;
DE Flags: Precursor;
GN Name=RPL12C; OrderedLocusNames=At3g27850; ORFNames=K16N12.7, K16N2.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=8125949; DOI=10.1016/s0021-9258(17)37288-5;
RA Wegloehner W., Subramanian A.R.;
RT "Multicopy GTPase center protein L12 of Arabidopsis chloroplast ribosome is
RT encoded by a clustered nuclear gene family with the expressed members
RT closely linked to tRNA(Pro) genes.";
RL J. Biol. Chem. 269:7330-7336(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL12 family.
CC {ECO:0000305}.
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DR EMBL; X68046; CAA48183.1; -; Genomic_DNA.
DR EMBL; AP000371; BAB02531.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77372.1; -; Genomic_DNA.
DR EMBL; AY037241; AAK59841.1; -; mRNA.
DR EMBL; AY136300; AAM96966.1; -; mRNA.
DR EMBL; AY143956; AAN28895.1; -; mRNA.
DR PIR; C53394; C53394.
DR RefSeq; NP_189423.1; NM_113701.3.
DR AlphaFoldDB; P36212; -.
DR SMR; P36212; -.
DR BioGRID; 7735; 2.
DR STRING; 3702.AT3G27850.1; -.
DR iPTMnet; P36212; -.
DR PaxDb; P36212; -.
DR PRIDE; P36212; -.
DR ProteomicsDB; 237026; -.
DR EnsemblPlants; AT3G27850.1; AT3G27850.1; AT3G27850.
DR GeneID; 822405; -.
DR Gramene; AT3G27850.1; AT3G27850.1; AT3G27850.
DR KEGG; ath:AT3G27850; -.
DR Araport; AT3G27850; -.
DR TAIR; locus:2086450; AT3G27850.
DR eggNOG; KOG1715; Eukaryota.
DR HOGENOM; CLU_086499_1_2_1; -.
DR InParanoid; P36212; -.
DR OMA; ASVHHFP; -.
DR OrthoDB; 1626139at2759; -.
DR PhylomeDB; P36212; -.
DR PRO; PR:P36212; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; P36212; baseline and differential.
DR Genevisible; P36212; AT.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0000311; C:plastid large ribosomal subunit; ISS:TAIR.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR CDD; cd00387; Ribosomal_L7_L12; 1.
DR Gene3D; 1.20.5.710; -; 1.
DR Gene3D; 3.30.1390.10; -; 1.
DR HAMAP; MF_00368; Ribosomal_L7_L12; 1.
DR InterPro; IPR000206; Ribosomal_L7/12.
DR InterPro; IPR014719; Ribosomal_L7/12_C/ClpS-like.
DR InterPro; IPR013823; Ribosomal_L7/L12_C.
DR InterPro; IPR008932; Ribosomal_L7/L12_oligo.
DR InterPro; IPR036235; Ribosomal_L7/L12_oligo_N_sf.
DR PANTHER; PTHR45987; PTHR45987; 1.
DR Pfam; PF00542; Ribosomal_L12; 1.
DR Pfam; PF16320; Ribosomal_L12_N; 1.
DR SUPFAM; SSF48300; SSF48300; 1.
DR SUPFAM; SSF54736; SSF54736; 1.
DR TIGRFAMs; TIGR00855; L12; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; Transit peptide.
FT TRANSIT 1..54
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 55..187
FT /note="50S ribosomal protein L12-3, chloroplastic"
FT /id="PRO_0000030450"
FT CONFLICT 20
FT /note="S -> C (in Ref. 1; CAA48183)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 187 AA; 19682 MW; 1F705ADACB030199 CRC64;
MASTTLSIAT TIRSSSPLTS ASTHHFLSKP TAIEFPFRLS SSSSHRAINL RPISAVEAPE
KIEKIGSEIS SLTLEEARIL VDYLQDKFGV SPLSLAPAAA AVAAPADGGA AAVVEEQTEF
DVVINEVPSS SRIAVIKAVR ALTSLALKEA KELIEGLPKK FKEGITKDEA EEAKKTLEEA
GAKVSIA
