ID   RK12_ORYSJ              Reviewed;         185 AA.
AC   O22386; Q5SN25; Q9ZWF4;
DT   15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT   27-JUN-2006, sequence version 2.
DT   03-AUG-2022, entry version 107.
DE   RecName: Full=50S ribosomal protein L12, chloroplastic;
DE   AltName: Full=CL12;
DE   Flags: Precursor;
GN   Name=RPL12-2; OrderedLocusNames=Os01g0662300, LOC_Os01g47330;
GN   ORFNames=P0671D01.26;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=cv. Nipponbare; TISSUE=Leaf;
RX   AGRICOLA=IND21967357; DOI=10.1007/s001220050873;
RA   Kusaka M., Kurashige M., Hirai A., Tsutsumi N.;
RT   "Characterization of two rice genes for nuclear-encoded chloroplast
RT   ribosomal protein L12 and phylogenetic analysis of the acquisition of
RT   transit peptides and gene duplication.";
RL   Theor. Appl. Genet. 97:110-115(1998).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
RC   STRAIN=cv. Ilpoom; TISSUE=Seedling;
RA   Lee J.S.;
RT   "Characterization of homologue of ribosomal protein L12 gene from rice.";
RL   Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447438; DOI=10.1038/nature01184;
RA   Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA   Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA   Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA   Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA   Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA   Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA   Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA   Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA   Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA   Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA   Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA   Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA   Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT   "The genome sequence and structure of rice chromosome 1.";
RL   Nature 420:312-316(2002).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=O22386-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=O22386-2; Sequence=VSP_019482;
CC   -!- MISCELLANEOUS: [Isoform 2]: Incomplete sequence. {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL12 family.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAD72371.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AB022674; BAA37171.1; -; Genomic_DNA.
DR   EMBL; AF010581; AAB66886.1; -; mRNA.
DR   EMBL; AP003284; BAD72371.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   PIR; PC4267; PC4267.
DR   RefSeq; XP_015624137.1; XM_015768651.1. [O22386-1]
DR   AlphaFoldDB; O22386; -.
DR   SMR; O22386; -.
DR   STRING; 4530.OS01T0662300-01; -.
DR   PaxDb; O22386; -.
DR   PRIDE; O22386; -.
DR   GeneID; 9271252; -.
DR   KEGG; osa:9271252; -.
DR   eggNOG; KOG1715; Eukaryota.
DR   InParanoid; O22386; -.
DR   OrthoDB; 1626139at2759; -.
DR   Proteomes; UP000000763; Chromosome 1.
DR   Proteomes; UP000059680; Chromosome 1.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   CDD; cd00387; Ribosomal_L7_L12; 1.
DR   Gene3D; 1.20.5.710; -; 1.
DR   Gene3D; 3.30.1390.10; -; 1.
DR   HAMAP; MF_00368; Ribosomal_L7_L12; 1.
DR   InterPro; IPR000206; Ribosomal_L7/12.
DR   InterPro; IPR014719; Ribosomal_L7/12_C/ClpS-like.
DR   InterPro; IPR013823; Ribosomal_L7/L12_C.
DR   InterPro; IPR008932; Ribosomal_L7/L12_oligo.
DR   InterPro; IPR036235; Ribosomal_L7/L12_oligo_N_sf.
DR   PANTHER; PTHR45987; PTHR45987; 1.
DR   Pfam; PF00542; Ribosomal_L12; 1.
DR   Pfam; PF16320; Ribosomal_L12_N; 1.
DR   SUPFAM; SSF48300; SSF48300; 1.
DR   SUPFAM; SSF54736; SSF54736; 1.
DR   TIGRFAMs; TIGR00855; L12; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Chloroplast; Plastid; Reference proteome;
KW   Ribonucleoprotein; Ribosomal protein; Transit peptide.
FT   TRANSIT         1..47
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           48..185
FT                   /note="50S ribosomal protein L12, chloroplastic"
FT                   /id="PRO_0000030451"
FT   VAR_SEQ         90..107
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|Ref.2"
FT                   /id="VSP_019482"
FT   CONFLICT        53
FT                   /note="E -> D (in Ref. 2; AAB66886)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   185 AA;  18590 MW;  EBBFA7FFC98609AB CRC64;
     MASTALSSAF SLLSLPSSSS PAAAAAAAPR SFAVPSRARP RRAVAVVAST ATESPKVLEL
     GDAIAGLTLE EARGLVDHLQ ERLGVSAAAF APAAVVAAPG AGGAGAAADE APAEKTEFDV
     VIEEVPSSAR IASIKVVRAL TNLALKEAKD LIEGLPKKVK EGVSKDEAED AKKQLEEVGA
     KVSIA