RK15_ARATH
ID RK15_ARATH Reviewed; 277 AA.
AC P25873; Q9LU99;
DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot.
DT 06-JUN-2002, sequence version 2.
DT 25-MAY-2022, entry version 146.
DE RecName: Full=50S ribosomal protein L15, chloroplastic;
DE AltName: Full=CL15;
DE Flags: Precursor;
GN Name=RPL15; OrderedLocusNames=At3g25920;
GN ORFNames=MPE11.32, MPE11.9, MPE11_7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=1581570; DOI=10.1007/bf00019207;
RA Thompson M.D., Jacks C.M., Lenvik T.R., Gantt J.S.;
RT "Characterization of rps17, rp19 and rpl15: three nucleus-encoded plastid
RT ribosomal protein genes.";
RL Plant Mol. Biol. 18:931-944(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT THR-68, CLEAVAGE OF TRANSIT PEPTIDE
RP [LARGE SCALE ANALYSIS] AFTER GLN-67, AND IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL15 family.
CC {ECO:0000305}.
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DR EMBL; Z11508; CAA77593.1; -; Genomic_DNA.
DR EMBL; Z11507; CAA77592.1; -; mRNA.
DR EMBL; AB023041; BAB01055.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77091.1; -; Genomic_DNA.
DR EMBL; AY059125; AAL15231.1; -; mRNA.
DR EMBL; AF370235; AAK44050.1; -; mRNA.
DR EMBL; AF424601; AAL11595.1; -; mRNA.
DR EMBL; AY084483; AAM61054.1; -; mRNA.
DR PIR; S20944; R5MUL5.
DR RefSeq; NP_189221.1; NM_113496.5.
DR AlphaFoldDB; P25873; -.
DR SMR; P25873; -.
DR BioGRID; 7520; 49.
DR IntAct; P25873; 1.
DR STRING; 3702.AT3G25920.1; -.
DR iPTMnet; P25873; -.
DR MetOSite; P25873; -.
DR PaxDb; P25873; -.
DR PRIDE; P25873; -.
DR ProteomicsDB; 234844; -.
DR EnsemblPlants; AT3G25920.1; AT3G25920.1; AT3G25920.
DR GeneID; 822189; -.
DR Gramene; AT3G25920.1; AT3G25920.1; AT3G25920.
DR KEGG; ath:AT3G25920; -.
DR Araport; AT3G25920; -.
DR TAIR; locus:2092155; AT3G25920.
DR eggNOG; KOG0846; Eukaryota.
DR HOGENOM; CLU_055188_0_0_1; -.
DR InParanoid; P25873; -.
DR OMA; STTHFAS; -.
DR OrthoDB; 930708at2759; -.
DR PhylomeDB; P25873; -.
DR PRO; PR:P25873; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; P25873; baseline and differential.
DR Genevisible; P25873; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0000311; C:plastid large ribosomal subunit; TAS:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; ISS:TAIR.
DR GO; GO:0006412; P:translation; TAS:TAIR.
DR HAMAP; MF_01341; Ribosomal_L15; 1.
DR InterPro; IPR036227; L18e/L15P_sf.
DR InterPro; IPR030878; Ribosomal_L15.
DR InterPro; IPR005749; Ribosomal_L15_bac-type.
DR InterPro; IPR001196; Ribosomal_L15_CS.
DR InterPro; IPR021131; Ribosomal_L18e/L15P.
DR PANTHER; PTHR12934; PTHR12934; 1.
DR Pfam; PF00828; Ribosomal_L27A; 1.
DR SUPFAM; SSF52080; SSF52080; 1.
DR TIGRFAMs; TIGR01071; rplO_bact; 1.
DR PROSITE; PS00475; RIBOSOMAL_L15; 1.
PE 1: Evidence at protein level;
KW Acetylation; Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; Transit peptide.
FT TRANSIT 1..67
FT /note="Chloroplast"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CHAIN 68..277
FT /note="50S ribosomal protein L15, chloroplastic"
FT /id="PRO_0000030466"
FT REGION 81..125
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 68
FT /note="N-acetylthreonine"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CONFLICT 238
FT /note="G -> E (in Ref. 1; CAA77593/CAA77592)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 277 AA; 29707 MW; D4254217FA9CBE3F CRC64;
MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR
PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG RGISAGQGAS CGFGMRGQKS
RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE
TLKQKGLINP SGRERKLPLK ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK
KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA
