RK17_ARATH
ID RK17_ARATH Reviewed; 211 AA.
AC Q9M385; Q8LCR3;
DT 05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=50S ribosomal protein L17, chloroplastic;
DE AltName: Full=CL17;
DE Flags: Precursor;
GN Name=RPL17; OrderedLocusNames=At3g54210; ORFNames=F24B22.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: This protein binds directly to 23S ribosomal RNA.
CC {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL17 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM63452.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AL132957; CAB70995.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79199.1; -; Genomic_DNA.
DR EMBL; BT000413; AAN15732.1; -; mRNA.
DR EMBL; AY136290; AAM96956.1; -; mRNA.
DR EMBL; AY124804; AAM70513.1; -; mRNA.
DR EMBL; AF375425; AAK53009.1; -; mRNA.
DR EMBL; AY086449; AAM63452.1; ALT_INIT; mRNA.
DR PIR; T47580; T47580.
DR RefSeq; NP_190989.1; NM_115281.4.
DR AlphaFoldDB; Q9M385; -.
DR SMR; Q9M385; -.
DR BioGRID; 9905; 20.
DR IntAct; Q9M385; 1.
DR STRING; 3702.AT3G54210.1; -.
DR PaxDb; Q9M385; -.
DR PRIDE; Q9M385; -.
DR ProteomicsDB; 237007; -.
DR EnsemblPlants; AT3G54210.1; AT3G54210.1; AT3G54210.
DR GeneID; 824588; -.
DR Gramene; AT3G54210.1; AT3G54210.1; AT3G54210.
DR KEGG; ath:AT3G54210; -.
DR Araport; AT3G54210; -.
DR TAIR; locus:2080335; AT3G54210.
DR eggNOG; KOG3280; Eukaryota.
DR HOGENOM; CLU_1247182_0_0_1; -.
DR InParanoid; Q9M385; -.
DR OMA; WQSFENG; -.
DR OrthoDB; 1540433at2759; -.
DR PhylomeDB; Q9M385; -.
DR PRO; PR:Q9M385; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M385; baseline and differential.
DR Genevisible; Q9M385; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0015934; C:large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.90.1030.10; -; 1.
DR HAMAP; MF_01368; Ribosomal_L17; 1.
DR InterPro; IPR000456; Ribosomal_L17.
DR InterPro; IPR036373; Ribosomal_L17_sf.
DR PANTHER; PTHR14413; PTHR14413; 1.
DR Pfam; PF01196; Ribosomal_L17; 1.
DR SUPFAM; SSF64263; SSF64263; 1.
DR TIGRFAMs; TIGR00059; L17; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..95
FT /note="Chloroplast"
FT /evidence="ECO:0000250"
FT CHAIN 96..211
FT /note="50S ribosomal protein L17, chloroplastic"
FT /id="PRO_0000249231"
SQ SEQUENCE 211 AA; 23481 MW; F2E5DD9C75821D56 CRC64;
MAIPMSMAMA TPTDSVSRVW SMSSLKSALP STASLRLPSS SSRRPVTLRL PISSPSLPSF
SGLSPVNPLL SIGLPDWQSF ENGFKIVDGG GRIYAMRHGR RVPKLNRPPD QRKALLRGLT
TQLLKHGRIK TTRARASAMR KFVDKMITLA KDGSLHKRRQ ALGYIYEKQI VHALFAEVPD
RYGERNGGYT RIIRTLPRRG DNAPMAYIEL V