RK18_ARATH
ID RK18_ARATH Reviewed; 170 AA.
AC Q9SX68;
DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=50S ribosomal protein L18, chloroplastic;
DE AltName: Full=CL18;
DE Flags: Precursor;
GN Name=RPL18; OrderedLocusNames=At1g48350; ORFNames=F11A17.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the
CC 50S subunit. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit; contacts the 5S rRNA.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL18 family.
CC {ECO:0000305}.
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DR EMBL; AC007932; AAD49760.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32277.1; -; Genomic_DNA.
DR EMBL; AF336922; AAG54003.1; -; mRNA.
DR PIR; E96523; E96523.
DR RefSeq; NP_175268.1; NM_103731.6.
DR AlphaFoldDB; Q9SX68; -.
DR SMR; Q9SX68; -.
DR BioGRID; 26480; 5.
DR STRING; 3702.AT1G48350.1; -.
DR iPTMnet; Q9SX68; -.
DR MetOSite; Q9SX68; -.
DR PaxDb; Q9SX68; -.
DR PRIDE; Q9SX68; -.
DR ProteomicsDB; 226815; -.
DR EnsemblPlants; AT1G48350.1; AT1G48350.1; AT1G48350.
DR GeneID; 841255; -.
DR Gramene; AT1G48350.1; AT1G48350.1; AT1G48350.
DR KEGG; ath:AT1G48350; -.
DR Araport; AT1G48350; -.
DR TAIR; locus:2007690; AT1G48350.
DR eggNOG; KOG1870; Eukaryota.
DR HOGENOM; CLU_098841_0_0_1; -.
DR InParanoid; Q9SX68; -.
DR OMA; NKQIYAQ; -.
DR OrthoDB; 1400359at2759; -.
DR PhylomeDB; Q9SX68; -.
DR PRO; PR:Q9SX68; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SX68; baseline and differential.
DR Genevisible; Q9SX68; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005737; C:cytoplasm; IDA:CAFA.
DR GO; GO:0005730; C:nucleolus; IDA:CAFA.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0008097; F:5S rRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_01337_B; Ribosomal_L18_B; 1.
DR InterPro; IPR005484; Ribosomal_L18.
DR InterPro; IPR004389; Ribosomal_L18_bac-type.
DR PANTHER; PTHR12899; PTHR12899; 1.
DR Pfam; PF00861; Ribosomal_L18p; 1.
DR TIGRFAMs; TIGR00060; L18_bact; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..47
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 48..170
FT /note="50S ribosomal protein L18, chloroplastic"
FT /id="PRO_0000030470"
SQ SEQUENCE 170 AA; 18726 MW; 841F1EF9B11D1BB4 CRC64;
MTSVSGCGSV SLITNRSAFL GNGLQHRAVF LKPWSSSSLQ SRSMVVEAKT KTSSEDRIAR
HSRIRKKVNG TTERPRLCVF RSNKHLYVQV IDDTKMHTLA SASTKQKPIS EEFDYTSGPT
IEVAKKVGEV IAKSCLEKGI TKVAFDRGGY PYHGRIEALA AAAREHGLQF
