RK23_ORYSJ
ID RK23_ORYSJ Reviewed; 93 AA.
AC P0C451; P12097; Q6QXY1; Q6QY29;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 12-JUN-2007, sequence version 1.
DT 03-AUG-2022, entry version 73.
DE RecName: Full=50S ribosomal protein L23, chloroplastic;
GN Name=rpl23-A; ORFNames=Nip215a;
GN and
GN Name=rpl23-B; ORFNames=Nip215b;
OS Oryza sativa subsp. japonica (Rice).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Labelle; TISSUE=Seedling;
RX PubMed=3240862; DOI=10.1016/0378-1119(88)90099-6;
RA Moon E., Wu R.;
RT "Organization and nucleotide sequence of genes at both junctions between
RT the two inverted repeats and the large single-copy region in the rice
RT chloroplast genome.";
RL Gene 70:1-12(1988).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=2770692; DOI=10.1007/bf02464880;
RA Hiratsuka J., Shimada H., Whittier R., Ishibashi T., Sakamoto M., Mori M.,
RA Kondo C., Honji Y., Sun C.-R., Meng B.-Y., Li Y.-Q., Kanno A.,
RA Nishizawa Y., Hirai A., Shinozaki K., Sugiura M.;
RT "The complete sequence of the rice (Oryza sativa) chloroplast genome:
RT intermolecular recombination between distinct tRNA genes accounts for a
RT major plastid DNA inversion during the evolution of the cereals.";
RL Mol. Gen. Genet. 217:185-194(1989).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15122023; DOI=10.1104/pp.103.031245;
RA Tang J., Xia H., Cao M., Zhang X., Zeng W., Hu S., Tong W., Wang J.,
RA Wang J., Yu J., Yang H., Zhu L.;
RT "A comparison of rice chloroplast genomes.";
RL Plant Physiol. 135:412-420(2004).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
CC -!- FUNCTION: Binds to 23S rRNA. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL23 family.
CC {ECO:0000305}.
CC -!- CAUTION: A stretch of the chloroplast genome is duplicated within
CC chromosomes 7 and 9 resulting in the duplication of the gene. The
CC expression of these duplicated genes has not been demonstrated.
CC {ECO:0000305}.
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DR EMBL; M22826; AAA84593.1; -; Genomic_DNA.
DR EMBL; L40578; AAD15253.1; -; Genomic_DNA.
DR EMBL; X15901; CAA33923.1; -; Genomic_DNA.
DR EMBL; X15901; CAA33938.1; -; Genomic_DNA.
DR EMBL; AY522330; AAS46150.1; -; Genomic_DNA.
DR EMBL; AY522330; AAS46165.1; -; Genomic_DNA.
DR EMBL; AP005683; BAD33778.1; -; Genomic_DNA.
DR EMBL; AP005707; BAD36255.1; -; Genomic_DNA.
DR EMBL; AP006052; BAD31897.1; -; Genomic_DNA.
DR PIR; JQ0271; R5RZ23.
DR RefSeq; NP_039429.1; NC_001320.1.
DR RefSeq; NP_039462.1; NC_001320.1.
DR AlphaFoldDB; P0C451; -.
DR SMR; P0C451; -.
DR STRING; 39947.P0C451; -.
DR PaxDb; P0C451; -.
DR PRIDE; P0C451; -.
DR GeneID; 3131427; -.
DR GeneID; 3131428; -.
DR KEGG; osa:3131427; -.
DR KEGG; osa:3131428; -.
DR InParanoid; P0C451; -.
DR OrthoDB; 1515153at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chloroplast.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0009536; C:plastid; IC:Gramene.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0000027; P:ribosomal large subunit assembly; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.70.330; -; 1.
DR HAMAP; MF_01369_B; Ribosomal_L23_B; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom_sf.
DR InterPro; IPR001014; Ribosomal_L23/L25_CS.
DR InterPro; IPR013025; Ribosomal_L25/23.
DR PANTHER; PTHR11620; PTHR11620; 1.
DR Pfam; PF00276; Ribosomal_L23; 1.
DR SUPFAM; SSF54189; SSF54189; 1.
DR PROSITE; PS00050; RIBOSOMAL_L23; 1.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding.
FT CHAIN 1..93
FT /note="50S ribosomal protein L23, chloroplastic"
FT /id="PRO_0000290050"
FT CONFLICT 15
FT /note="R -> A (in Ref. 1; AAA84593)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 93 AA; 10764 MW; 721EBD893CF77566 CRC64;
MDGIKYAVFT EKSLRLLGKN QYTFNVESGF TKTEIKHWVE LFFGVKVVAV NSHRLPGKGR
RMGPILGHTM HYRRMIITLQ PGYSIPLLDR EKN
