RK28_ARATH
ID RK28_ARATH Reviewed; 143 AA.
AC O22795; Q8VY79;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 20-JUN-2002, sequence version 2.
DT 25-MAY-2022, entry version 133.
DE RecName: Full=50S ribosomal protein L28, chloroplastic;
DE AltName: Full=CL28;
DE Flags: Precursor;
GN Name=RPL28; OrderedLocusNames=At2g33450; ORFNames=F4P9.22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP DISRUPTION PHENOTYPE.
RX PubMed=22900828; DOI=10.1111/tpj.12000;
RA Romani I., Tadini L., Rossi F., Masiero S., Pribil M., Jahns P., Kater M.,
RA Leister D., Pesaresi P.;
RT "Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth
RT and development.";
RL Plant J. 72:922-934(2012).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC -!- DISRUPTION PHENOTYPE: Seedling lethality. Albino seedlings unable to
CC grow under photoautotrophic conditions. {ECO:0000269|PubMed:22900828}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL28 family.
CC {ECO:0000305}.
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DR EMBL; AC002332; AAB80662.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC08836.1; -; Genomic_DNA.
DR EMBL; AY072373; AAL62365.1; -; mRNA.
DR EMBL; AY114618; AAM47937.1; -; mRNA.
DR EMBL; AY087094; AAM64654.1; -; mRNA.
DR PIR; F84745; F84745.
DR RefSeq; NP_565765.1; NM_128905.3.
DR AlphaFoldDB; O22795; -.
DR SMR; O22795; -.
DR BioGRID; 3257; 14.
DR IntAct; O22795; 1.
DR STRING; 3702.AT2G33450.1; -.
DR PaxDb; O22795; -.
DR PRIDE; O22795; -.
DR ProteomicsDB; 234853; -.
DR EnsemblPlants; AT2G33450.1; AT2G33450.1; AT2G33450.
DR GeneID; 817910; -.
DR Gramene; AT2G33450.1; AT2G33450.1; AT2G33450.
DR KEGG; ath:AT2G33450; -.
DR Araport; AT2G33450; -.
DR TAIR; locus:2051023; AT2G33450.
DR eggNOG; ENOG502S1B9; Eukaryota.
DR HOGENOM; CLU_064548_5_0_1; -.
DR InParanoid; O22795; -.
DR OMA; VCPFTDK; -.
DR OrthoDB; 1614134at2759; -.
DR PhylomeDB; O22795; -.
DR PRO; PR:O22795; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O22795; baseline and differential.
DR Genevisible; O22795; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0005762; C:mitochondrial large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 2.30.170.40; -; 1.
DR HAMAP; MF_00373; Ribosomal_L28; 1.
DR InterPro; IPR034704; L28p-like.
DR InterPro; IPR026569; Ribo_L28/L24.
DR InterPro; IPR037147; Ribo_L28/L24_sf.
DR InterPro; IPR001383; Ribosomal_L28.
DR PANTHER; PTHR13528; PTHR13528; 1.
DR Pfam; PF00830; Ribosomal_L28; 1.
DR SUPFAM; SSF143800; SSF143800; 1.
DR TIGRFAMs; TIGR00009; L28; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; Transit peptide.
FT TRANSIT 1..66
FT /note="Chloroplast"
FT /evidence="ECO:0000250"
FT CHAIN 67..143
FT /note="50S ribosomal protein L28, chloroplastic"
FT /id="PRO_0000030504"
SQ SEQUENCE 143 AA; 16033 MW; BCE0675CCC61F80A CRC64;
MTTMATQGAW LRMTSSAKSM TKSTVTSKEL GFLTSQLSGL RISYTPSDVI NRISLPSFPG
IQPIVARRIC PFTGKKANRA NKVSFSNHKT KKLQFVNLQY KRVWWEAGKR FVKLRLSTKA
LKTIEKNGLD AVAKKAGIDL RKK
