RK2_ORYSJ
ID RK2_ORYSJ Reviewed; 273 AA.
AC P0C497; P17351; P92327; Q6QXY2; Q6QY28; Q8HR51;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 12-JUN-2007, sequence version 1.
DT 03-AUG-2022, entry version 82.
DE RecName: Full=50S ribosomal protein L2, chloroplastic;
GN Name=rpl2-A; OrderedLocusNames=LOC_Osp1g01100; ORFNames=Nip216a;
GN and
GN Name=rpl2-B;
OS Oryza sativa subsp. japonica (Rice).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Labelle; TISSUE=Seedling;
RX PubMed=3240862; DOI=10.1016/0378-1119(88)90099-6;
RA Moon E., Wu R.;
RT "Organization and nucleotide sequence of genes at both junctions between
RT the two inverted repeats and the large single-copy region in the rice
RT chloroplast genome.";
RL Gene 70:1-12(1988).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=2770692; DOI=10.1007/bf02464880;
RA Hiratsuka J., Shimada H., Whittier R., Ishibashi T., Sakamoto M., Mori M.,
RA Kondo C., Honji Y., Sun C.-R., Meng B.-Y., Li Y.-Q., Kanno A.,
RA Nishizawa Y., Hirai A., Shinozaki K., Sugiura M.;
RT "The complete sequence of the rice (Oryza sativa) chloroplast genome:
RT intermolecular recombination between distinct tRNA genes accounts for a
RT major plastid DNA inversion during the evolution of the cereals.";
RL Mol. Gen. Genet. 217:185-194(1989).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15122023; DOI=10.1104/pp.103.031245;
RA Tang J., Xia H., Cao M., Zhang X., Zeng W., Hu S., Tong W., Wang J.,
RA Wang J., Yu J., Yang H., Zhu L.;
RT "A comparison of rice chloroplast genomes.";
RL Plant Physiol. 135:412-420(2004).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- RNA EDITING: Modified_positions=1 {ECO:0000250}; Note=The initiator
CC methionine is created by RNA editing. {ECO:0000250};
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL2 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAS46149.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; M22826; AAN77249.1; -; Genomic_DNA.
DR EMBL; L40578; AAD15254.1; ALT_SEQ; Genomic_DNA.
DR EMBL; X15901; CAA33924.1; ALT_SEQ; Genomic_DNA.
DR EMBL; X15901; CAA33928.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AY522330; AAS46149.1; ALT_SEQ; Genomic_DNA.
DR PIR; JQ0270; R5RZ2.
DR RefSeq; NP_039427.2; NC_001320.1.
DR RefSeq; NP_039463.2; NC_001320.1.
DR AlphaFoldDB; P0C497; -.
DR SMR; P0C497; -.
DR STRING; 4530.OS10T0214132-00; -.
DR PaxDb; P0C497; -.
DR PRIDE; P0C497; -.
DR GeneID; 3131421; -.
DR GeneID; 3131424; -.
DR KEGG; osa:3131421; -.
DR KEGG; osa:3131424; -.
DR eggNOG; KOG0438; Eukaryota.
DR InParanoid; P0C497; -.
DR OrthoDB; 1156335at2759; -.
DR Proteomes; UP000059680; Chloroplast.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0009536; C:plastid; IC:Gramene.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0016740; F:transferase activity; IEA:InterPro.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 2.30.30.30; -; 1.
DR Gene3D; 2.40.50.140; -; 1.
DR Gene3D; 4.10.950.10; -; 1.
DR HAMAP; MF_01320_B; Ribosomal_L2_B; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR022666; Rbsml_prot_L2_RNA-bd_dom.
DR InterPro; IPR014722; Rib_L2_dom2.
DR InterPro; IPR002171; Ribosomal_L2.
DR InterPro; IPR005880; Ribosomal_L2_bac/org-type.
DR InterPro; IPR022669; Ribosomal_L2_C.
DR InterPro; IPR022671; Ribosomal_L2_CS.
DR InterPro; IPR014726; Ribosomal_L2_dom3.
DR InterPro; IPR008991; Translation_prot_SH3-like_sf.
DR PANTHER; PTHR13691; PTHR13691; 1.
DR Pfam; PF00181; Ribosomal_L2; 1.
DR Pfam; PF03947; Ribosomal_L2_C; 1.
DR PIRSF; PIRSF002158; Ribosomal_L2; 1.
DR SMART; SM01383; Ribosomal_L2; 1.
DR SMART; SM01382; Ribosomal_L2_C; 1.
DR SUPFAM; SSF50104; SSF50104; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
DR TIGRFAMs; TIGR01171; rplB_bact; 1.
DR PROSITE; PS00467; RIBOSOMAL_L2; 1.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA editing.
FT CHAIN 1..273
FT /note="50S ribosomal protein L2, chloroplastic"
FT /id="PRO_0000290090"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 225..273
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 254..273
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 69
FT /note="Q -> E (in Ref. 1; AAN77249/AAD15254)"
FT /evidence="ECO:0000305"
FT CONFLICT 200
FT /note="Q -> K (in Ref. 1; AAN77249/AAD15254)"
FT /evidence="ECO:0000305"
FT CONFLICT 230..246
FT /note="HGGGEGKAPIGRKKPTT -> MGAVKGKPPLVEKNPQP (in Ref. 1;
FT AAN77249/AAD15254)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 273 AA; 29942 MW; AA4153C62AA8729B CRC64;
MAKHLYKTPI PSTRKGTIDR QVKSNPRNNL IHGRHRCGKG RNSRGIITAR HRGGGHKRLY
RKIDFRRNQK DISGRIVTIE YDPNRNAYIC LIHYGDGEKG YILHPRGAII GDTIVSGTKV
PISMGNALPL TDMPLGTAIH NIEITRGRGG QLARAAGAVA KLIAKEGKSA TLRLPSGEVR
LVSQNCLATV GQVGNVGVNQ KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGKAPIG
RKKPTTPWGY PALGRRTRKR KKYSDSFILR RRK
