RK3A_ARATH
ID RK3A_ARATH Reviewed; 271 AA.
AC Q9SKX4; Q8LEQ9;
DT 16-FEB-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 128.
DE RecName: Full=50S ribosomal protein L3-1, chloroplastic;
DE Flags: Precursor;
GN Name=RPL3A; OrderedLocusNames=At2g43030; ORFNames=MFL8.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds directly
CC near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S
CC subunit. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL3 family.
CC {ECO:0000305}.
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DR EMBL; AC006224; AAD22128.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10201.1; -; Genomic_DNA.
DR EMBL; AY085287; AAM62519.1; -; mRNA.
DR PIR; B84861; B84861.
DR RefSeq; NP_181831.1; NM_129864.3.
DR AlphaFoldDB; Q9SKX4; -.
DR SMR; Q9SKX4; -.
DR BioGRID; 4242; 23.
DR STRING; 3702.AT2G43030.1; -.
DR MetOSite; Q9SKX4; -.
DR PaxDb; Q9SKX4; -.
DR PRIDE; Q9SKX4; -.
DR ProteomicsDB; 234711; -.
DR EnsemblPlants; AT2G43030.1; AT2G43030.1; AT2G43030.
DR GeneID; 818905; -.
DR Gramene; AT2G43030.1; AT2G43030.1; AT2G43030.
DR KEGG; ath:AT2G43030; -.
DR Araport; AT2G43030; -.
DR TAIR; locus:2053713; AT2G43030.
DR eggNOG; KOG3141; Eukaryota.
DR HOGENOM; CLU_044142_4_1_1; -.
DR InParanoid; Q9SKX4; -.
DR OMA; RGIKYGW; -.
DR OrthoDB; 1269775at2759; -.
DR PhylomeDB; Q9SKX4; -.
DR PRO; PR:Q9SKX4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SKX4; baseline and differential.
DR Genevisible; Q9SKX4; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_01325_B; Ribosomal_L3_B; 1.
DR InterPro; IPR000597; Ribosomal_L3.
DR InterPro; IPR019927; Ribosomal_L3_bac/org-type.
DR InterPro; IPR019926; Ribosomal_L3_CS.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR11229; PTHR11229; 1.
DR Pfam; PF00297; Ribosomal_L3; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR TIGRFAMs; TIGR03625; L3_bact; 1.
DR PROSITE; PS00474; RIBOSOMAL_L3; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..49
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 50..271
FT /note="50S ribosomal protein L3-1, chloroplastic"
FT /id="PRO_0000030532"
FT REGION 190..222
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 17
FT /note="T -> S (in Ref. 3; AAM62519)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 271 AA; 29364 MW; F2DEF39DC2E5ECB1 CRC64;
MAIAMAVVSF PSLLNKTTLS SSLFTPTFLP AKSSSLLIKS SPKTRFVVSS SMEAGIGVMG
SKLGMMSFFE EDGTVVPVTV VGFREGNIVT QIKTLATDGY DAVQIGYRRV RDKKLTKPET
GHLQKAGTIP MRHLQEFRLT NIEGFEPNQK LVFDEIFKEG DLVDVAGTTI GKGFQGGIKR
HHFKRGQMTH GSKSHRALGS IGAGTTPGRV YKGKKMPGRM GGTRTKIRKL KIVKVDKELN
VVMIKGALPG KPGNLLRITP AKIVGVNIPK N