RK3B_ARATH
ID RK3B_ARATH Reviewed; 324 AA.
AC Q9LRN8; Q93WN7;
DT 16-FEB-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=50S ribosomal protein L3-2, mitochondrial {ECO:0000305};
DE Flags: Precursor;
GN Name=RPL3B {ECO:0000305};
GN OrderedLocusNames=At3g17465 {ECO:0000312|Araport:AT3G17465};
GN ORFNames=MTO12.6 {ECO:0000312|EMBL:BAB02923.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 191-324.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds directly
CC near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S
CC subunit. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL3 family.
CC {ECO:0000305}.
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DR EMBL; AB028620; BAB02923.1; -; Genomic_DNA.
DR EMBL; AB022219; BAB02923.1; JOINED; Genomic_DNA.
DR EMBL; CP002686; AEE75957.1; -; Genomic_DNA.
DR EMBL; AF370170; AAK43985.2; -; mRNA.
DR RefSeq; NP_566579.1; NM_112626.3.
DR PDB; 6XYW; EM; 3.86 A; Ac=1-324.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; Q9LRN8; -.
DR SMR; Q9LRN8; -.
DR BioGRID; 6344; 15.
DR IntAct; Q9LRN8; 1.
DR STRING; 3702.AT3G17465.1; -.
DR PaxDb; Q9LRN8; -.
DR PRIDE; Q9LRN8; -.
DR ProteomicsDB; 226470; -.
DR EnsemblPlants; AT3G17465.1; AT3G17465.1; AT3G17465.
DR GeneID; 821011; -.
DR Gramene; AT3G17465.1; AT3G17465.1; AT3G17465.
DR KEGG; ath:AT3G17465; -.
DR Araport; AT3G17465; -.
DR TAIR; locus:2093586; AT3G17465.
DR eggNOG; KOG3141; Eukaryota.
DR HOGENOM; CLU_044142_1_0_1; -.
DR InParanoid; Q9LRN8; -.
DR OMA; FRDSGVM; -.
DR OrthoDB; 1269775at2759; -.
DR PhylomeDB; Q9LRN8; -.
DR PRO; PR:Q9LRN8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRN8; baseline and differential.
DR Genevisible; Q9LRN8; AT.
DR GO; GO:0005762; C:mitochondrial large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_01325_B; Ribosomal_L3_B; 1.
DR InterPro; IPR000597; Ribosomal_L3.
DR InterPro; IPR019927; Ribosomal_L3_bac/org-type.
DR InterPro; IPR019926; Ribosomal_L3_CS.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR11229; PTHR11229; 1.
DR Pfam; PF00297; Ribosomal_L3; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR TIGRFAMs; TIGR03625; L3_bact; 1.
DR PROSITE; PS00474; RIBOSOMAL_L3; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Mitochondrion; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..41
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 42..324
FT /note="50S ribosomal protein L3-2, mitochondrial"
FT /id="PRO_0000030533"
FT REGION 206..229
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 324 AA; 35404 MW; 0EC0204C3DEECB2D CRC64;
MAAVPRGLLS RINQFLSIRS ITPSSSESLP HCSSFFLIRR FSSDTGLMDG GGSDIIGAQT
RIIEAKQGEM SSRSKRTGII AVKCGMTALW DKWGKRIPIS ILWVDDNIVS QVKTVEKEGI
FALQIGCGQK KPKHLSKAVV GHFRAQGVPL KRKLREFPVT EDALLPVGTS LGVRHFVPGQ
YVDVTGITRG KGFQGCMKRH GFSGMPASHG ASLSHRSGGS TGQRDAPGKV FKGRKMAGRM
GADQRTVKNV WVYKIDPARN LMWVRGQVPG AEGNFVFIKD AWCKKPDISK LPFPTYLAPE
DEDPSELEPL VADLGEVDPF MLAE
