RK5_ORYSJ
ID RK5_ORYSJ Reviewed; 279 AA.
AC Q9ZST0; Q10SE8;
DT 19-JUL-2004, integrated into UniProtKB/Swiss-Prot.
DT 27-JUN-2006, sequence version 2.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=50S ribosomal protein L5, chloroplastic;
DE Flags: Precursor;
GN Name=RPL5; OrderedLocusNames=Os03g0125000, LOC_Os03g03360;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Ilpoom; TISSUE=Leaf;
RA Lee J.-S., Eun M.-Y.;
RT "Molecular cloning and characterization of three nuclear-encoded
RT chloroplast precursor of ribosomal protein genes in rice.";
RL Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Binds 5S rRNA, forms part of the central protuberance of the
CC 50S subunit. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit; contacts the 5S rRNA.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL5 family.
CC {ECO:0000305}.
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DR EMBL; AF095708; AAC64970.1; -; mRNA.
DR EMBL; AC119747; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; DP000009; ABF93741.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10728.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82066.1; -; Genomic_DNA.
DR EMBL; AK059557; BAG87031.1; -; mRNA.
DR EMBL; AK070779; BAG92135.1; -; mRNA.
DR EMBL; AK098999; BAG93857.1; -; mRNA.
DR EMBL; AK104137; BAG96446.1; -; mRNA.
DR RefSeq; XP_015627856.1; XM_015772370.1.
DR AlphaFoldDB; Q9ZST0; -.
DR SMR; Q9ZST0; -.
DR STRING; 4530.OS03T0125000-01; -.
DR PaxDb; Q9ZST0; -.
DR PRIDE; Q9ZST0; -.
DR EnsemblPlants; Os03t0125000-01; Os03t0125000-01; Os03g0125000.
DR EnsemblPlants; Os03t0125000-02; Os03t0125000-02; Os03g0125000.
DR GeneID; 4331459; -.
DR Gramene; Os03t0125000-01; Os03t0125000-01; Os03g0125000.
DR Gramene; Os03t0125000-02; Os03t0125000-02; Os03g0125000.
DR KEGG; osa:4331459; -.
DR eggNOG; KOG0398; Eukaryota.
DR HOGENOM; CLU_061015_0_0_1; -.
DR InParanoid; Q9ZST0; -.
DR OMA; VMYAFLD; -.
DR OrthoDB; 1118003at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q9ZST0; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.1440.10; -; 1.
DR HAMAP; MF_01333_B; Ribosomal_L5_B; 1.
DR InterPro; IPR002132; Ribosomal_L5.
DR InterPro; IPR020930; Ribosomal_L5_bac-type.
DR InterPro; IPR031309; Ribosomal_L5_C.
DR InterPro; IPR020929; Ribosomal_L5_CS.
DR InterPro; IPR022803; Ribosomal_L5_dom_sf.
DR InterPro; IPR031310; Ribosomal_L5_N.
DR PANTHER; PTHR11994; PTHR11994; 1.
DR Pfam; PF00281; Ribosomal_L5; 1.
DR Pfam; PF00673; Ribosomal_L5_C; 1.
DR SUPFAM; SSF55282; SSF55282; 1.
DR PROSITE; PS00358; RIBOSOMAL_L5; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide.
FT TRANSIT 1..43
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 44..279
FT /note="50S ribosomal protein L5, chloroplastic"
FT /id="PRO_0000030543"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 40..63
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 1..3
FT /note="MAA -> HEAV (in Ref. 1)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 279 AA; 30219 MW; 70B387C1A5B8AEDB CRC64;
MAATAVTLPS SPAPFPVTTT ASSSRNVRLL LRSPPPRRAL RVAASAAADA PPKPAPPPTS
PSGIVLVDPT EAQKVHRLKA VYDQKVVPLI TEEFGYTNVH QVPKVEKIVV NCGLGAEAGN
SKGLESAMKD LAMITGQWPV KTKAKKSVAS FKIREGNTIG IAVTLRGRVM FNFLDRLINL
GLPRTMDFLG VNPNSFDGHG NFTIGLRDQG VFPEIPYEVG GKKNGMDVCI VTTAKTDNEA
LRLLTLLGMP FAEHIKSSVV IRKKRLKRHH FMSKGRGRR
