RKD4_ARATH
ID RKD4_ARATH Reviewed; 256 AA.
AC Q9LVU8;
DT 30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Protein RKD4;
DE Short=AtRKD4;
DE AltName: Full=RWP-RK domain-containing protein 4;
GN Name=RKD4; OrderedLocusNames=At5g53040; ORFNames=MNB8.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15785851; DOI=10.1007/s00239-004-0144-2;
RA Schauser L., Wieloch W., Stougaard J.;
RT "Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus
RT japonicus.";
RL J. Mol. Evol. 60:229-237(2005).
CC -!- FUNCTION: Putative transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00852}.
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DR EMBL; AB018116; BAA97144.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96293.1; -; Genomic_DNA.
DR RefSeq; NP_200116.1; NM_124683.1.
DR AlphaFoldDB; Q9LVU8; -.
DR STRING; 3702.AT5G53040.1; -.
DR PaxDb; Q9LVU8; -.
DR PRIDE; Q9LVU8; -.
DR EnsemblPlants; AT5G53040.1; AT5G53040.1; AT5G53040.
DR GeneID; 835383; -.
DR Gramene; AT5G53040.1; AT5G53040.1; AT5G53040.
DR KEGG; ath:AT5G53040; -.
DR Araport; AT5G53040; -.
DR TAIR; locus:2168412; AT5G53040.
DR eggNOG; ENOG502QSPQ; Eukaryota.
DR HOGENOM; CLU_071153_3_1_1; -.
DR InParanoid; Q9LVU8; -.
DR OMA; NAGLHFQ; -.
DR OrthoDB; 1189824at2759; -.
DR PRO; PR:Q9LVU8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR InterPro; IPR044607; RKD-like.
DR InterPro; IPR003035; RWP-RK_dom.
DR PANTHER; PTHR46373; PTHR46373; 2.
DR Pfam; PF02042; RWP-RK; 1.
DR PROSITE; PS51519; RWP_RK; 1.
PE 3: Inferred from homology;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..256
FT /note="Protein RKD4"
FT /id="PRO_0000401498"
FT DOMAIN 130..216
FT /note="RWP-RK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00852"
FT COILED 190..224
FT /evidence="ECO:0000255"
SQ SEQUENCE 256 AA; 29896 MW; 07AEC88EF562C865 CRC64;
MSSSKHSSVF NYSALFLSLF LQQMDQNSLH HLDSPKIENE YEPDSLYDML DKLPPLDSLL
DMEDLKPNAG LHFQFHYNSF EDFFENIEVD NTIPSDIHLL TQEPYFSSDS SSSSPLAIQN
DGLISNVKVE KVTVKKKRNL KKKRQDKLEM SEIKQFFDRP IMKAAKELNV GLTVLKKRCR
ELGIYRWPHR KLKSLNSLIK NLKNVGMEEE VKNLEEHRFL IEQEPDAELS DGTKKLRQAC
FKANYKRRKS LGDDYY
