RL102_ARATH
ID RL102_ARATH Reviewed; 221 AA.
AC Q08770; Q42327; Q9ZVG7;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 26-SEP-2001, sequence version 2.
DT 03-AUG-2022, entry version 139.
DE RecName: Full=60S ribosomal protein L10-2;
DE AltName: Full=Wilms tumor suppressor protein homolog;
GN Name=RPL10B; OrderedLocusNames=At1g26910; ORFNames=T2P11.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=8108504; DOI=10.1104/pp.102.1.329;
RA Rivera-Madrid R., Marinho P., Chartier Y., Meyer Y.;
RT "Nucleotide sequence of an Arabidopsis thaliana cDNA clone encoding a
RT homolog to a suppressor of Wilms' tumor.";
RL Plant Physiol. 102:329-330(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 18-133.
RC STRAIN=cv. Columbia; TISSUE=Dry seed;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [6]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SUBUNIT: Component of the small ribosomal subunit. Mature ribosomes
CC consist of a small (40S) and a large (60S) subunit. The 40S subunit
CC contains about 33 different proteins and 1 molecule of RNA (18S). The
CC 60S subunit contains about 49 different proteins and 3 molecules of RNA
CC (25S, 5.8S and 5S) (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL16 family.
CC {ECO:0000305}.
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DR EMBL; Z15157; CAA78856.1; -; mRNA.
DR EMBL; AC005508; AAD14497.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30757.1; -; Genomic_DNA.
DR EMBL; AY087264; AAM64819.1; -; mRNA.
DR EMBL; Z46696; CAA86673.1; -; mRNA.
DR PIR; A86396; A86396.
DR PIR; JQ2244; JQ2244.
DR RefSeq; NP_174013.1; NM_102455.3.
DR AlphaFoldDB; Q08770; -.
DR SMR; Q08770; -.
DR BioGRID; 22278; 134.
DR STRING; 3702.AT1G26910.1; -.
DR iPTMnet; Q08770; -.
DR PaxDb; Q08770; -.
DR PRIDE; Q08770; -.
DR ProteomicsDB; 234816; -.
DR EnsemblPlants; AT1G26910.1; AT1G26910.1; AT1G26910.
DR GeneID; 837036; -.
DR Gramene; AT1G26910.1; AT1G26910.1; AT1G26910.
DR KEGG; ath:AT1G26910; -.
DR Araport; AT1G26910; -.
DR TAIR; locus:2202810; AT1G26910.
DR eggNOG; KOG0857; Eukaryota.
DR HOGENOM; CLU_084051_0_0_1; -.
DR InParanoid; Q08770; -.
DR OMA; HHVIREN; -.
DR OrthoDB; 1215841at2759; -.
DR PhylomeDB; Q08770; -.
DR PRO; PR:Q08770; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q08770; baseline and differential.
DR Genevisible; Q08770; AT.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0005840; C:ribosome; IPI:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0032502; P:developmental process; IMP:TAIR.
DR GO; GO:0010224; P:response to UV-B; IEP:TAIR.
DR GO; GO:0000027; P:ribosomal large subunit assembly; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd01433; Ribosomal_L16_L10e; 1.
DR Gene3D; 3.90.1170.10; -; 1.
DR InterPro; IPR001197; Ribosomal_L10e.
DR InterPro; IPR016180; Ribosomal_L10e/L16.
DR InterPro; IPR036920; Ribosomal_L10e/L16_sf.
DR InterPro; IPR018255; Ribosomal_L10e_CS.
DR PANTHER; PTHR11726; PTHR11726; 1.
DR Pfam; PF00252; Ribosomal_L16; 1.
DR PIRSF; PIRSF005590; Ribosomal_L10; 1.
DR SUPFAM; SSF54686; SSF54686; 1.
DR TIGRFAMs; TIGR00279; uL16_euk_arch; 1.
DR PROSITE; PS01257; RIBOSOMAL_L10E; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..221
FT /note="60S ribosomal protein L10-2"
FT /id="PRO_0000147115"
FT CONFLICT 48
FT /note="Y -> F (in Ref. 1 and 5)"
FT /evidence="ECO:0000305"
FT CONFLICT 94
FT /note="F -> S (in Ref. 1; CAA78856)"
FT /evidence="ECO:0000305"
FT CONFLICT 181
FT /note="Y -> F (in Ref. 1; CAA78856)"
FT /evidence="ECO:0000305"
FT CONFLICT 190
FT /note="I -> V (in Ref. 1; CAA78856)"
FT /evidence="ECO:0000305"
FT CONFLICT 217..221
FT /note="SAGAQ -> PAHY (in Ref. 1; CAA78856)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 221 AA; 24909 MW; 77AFBB07D50776C8 CRC64;
MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV
SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN KMLSCAGADR LQTGMRGAFG
KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD
YTKLRQEKRI VPDGVNAKFL SCHGPLANRQ PGSAFLSAGA Q
