RL11_ORYSI
ID RL11_ORYSI Reviewed; 182 AA.
AC A2YDY2; O22540; Q60EZ4;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-SEP-2007, sequence version 2.
DT 25-MAY-2022, entry version 78.
DE RecName: Full=60S ribosomal protein L11;
GN Name=RPL11; ORFNames=OsI_022525;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Milyang 23; TISSUE=Seed;
RA Lee M.C., Kim C.S., Eun M.Y.;
RT "Isolation and characterization of ribosomal protein from rice.";
RL Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Component of the ribosome, a large ribonucleoprotein complex
CC responsible for the synthesis of proteins in the cell. The small
CC ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the
CC encoded message by selecting cognate aminoacyl-transfer RNA (tRNA)
CC molecules. The large subunit (LSU) contains the ribosomal catalytic
CC site termed the peptidyl transferase center (PTC), which catalyzes the
CC formation of peptide bonds, thereby polymerizing the amino acids
CC delivered by tRNAs into a polypeptide chain. The nascent polypeptides
CC leave the ribosome through a tunnel in the LSU and interact with
CC protein factors that function in enzymatic processing, targeting, and
CC the membrane insertion of nascent chains at the exit of the ribosomal
CC tunnel. {ECO:0000250|UniProtKB:P0C0W9}.
CC -!- SUBUNIT: Component of the large ribosomal subunit.
CC {ECO:0000250|UniProtKB:P0C0W9}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:P0C0W9}. Cytoplasm
CC {ECO:0000250|UniProtKB:P0C0W9}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL5 family.
CC {ECO:0000305}.
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DR EMBL; AF022736; AAB82139.1; -; mRNA.
DR EMBL; CM000131; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; T02091; T02091.
DR AlphaFoldDB; A2YDY2; -.
DR SMR; A2YDY2; -.
DR STRING; 39946.A2YDY2; -.
DR iPTMnet; A2YDY2; -.
DR PRIDE; A2YDY2; -.
DR EnsemblPlants; BGIOSGA019352-TA; BGIOSGA019352-PA; BGIOSGA019352.
DR EnsemblPlants; BGIOSGA021063-TA; BGIOSGA021063-PA; BGIOSGA021063.
DR Gramene; BGIOSGA019352-TA; BGIOSGA019352-PA; BGIOSGA019352.
DR Gramene; BGIOSGA021063-TA; BGIOSGA021063-PA; BGIOSGA021063.
DR HOGENOM; CLU_061015_3_0_1; -.
DR OMA; QTETIKW; -.
DR Proteomes; UP000007015; Chromosome 6.
DR ExpressionAtlas; A2YDY2; differential.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.1440.10; -; 1.
DR InterPro; IPR002132; Ribosomal_L5.
DR InterPro; IPR031309; Ribosomal_L5_C.
DR InterPro; IPR020929; Ribosomal_L5_CS.
DR InterPro; IPR022803; Ribosomal_L5_dom_sf.
DR InterPro; IPR031310; Ribosomal_L5_N.
DR PANTHER; PTHR11994; PTHR11994; 1.
DR Pfam; PF00281; Ribosomal_L5; 1.
DR Pfam; PF00673; Ribosomal_L5_C; 1.
DR PIRSF; PIRSF002161; Ribosomal_L5; 1.
DR SUPFAM; SSF55282; SSF55282; 1.
DR PROSITE; PS00358; RIBOSOMAL_L5; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Nucleus; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding.
FT CHAIN 1..182
FT /note="60S ribosomal protein L11"
FT /id="PRO_0000302056"
FT CONFLICT 13
FT /note="E -> D (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 43
FT /note="S -> I (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 91
FT /note="Y -> C (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 97..98
FT /note="NF -> SC (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 117..118
FT /note="KY -> QC (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 124
FT /note="I -> F (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 174
FT /note="L -> F (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
FT CONFLICT 181
FT /note="T -> M (in Ref. 1; AAB82139)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 182 AA; 20836 MW; D1555C8F0623A9FA CRC64;
MASEKKQSNP MREIKVQKLV LNISVGESGD RLTRASKVLE QLSGQSPVFS KARYTVRSFG
IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSE TGCFGFGIQE HIDLGIKYDP
STGIYGMDFY VVLERAGYRV ARRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKAQAN
TS